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The map label for this gene is dapE [H]

Identifier: 221229993

GI number: 221229993

Start: 1223740

End: 1224804

Strand: Direct

Name: dapE [H]

Synonym: MLBr_01059

Alternate gene names: 221229993

Gene position: 1223740-1224804 (Clockwise)

Preceding gene: 221229991

Following gene: 221229994

Centisome position: 37.45

GC content: 64.13

Gene sequence:

>1065_bases
GTGCTGGATTTGCGCGGGGACCCGATTGAGCTGACCGCGGCGCTCGTCGACATCCCCAGCGAGTCACGGGCTGAAGCACG
CATCGCTGATGCGGTGGAGACTGCGCTGCGGGCCCAGACCGCCGGCTTCGAGATTGTTCGTAACGGCAACGCTGTGTTGG
CGCGCACCTCGTTGCACCGGCCGGCGCGGGTGCTGCTAGCCGGGCACCTAGACACCGTTCCGGTGGCCGGAAACCTGCCT
AGCCGCTGCGAGAAGGACGTGCTACACGGCTGCGGCACCGTGGATATGAAATCCGGTGATGCGGTTTTCCTACACTTGGC
GGCCACCGTGACCGAGCCGGTGCATGACTTGACGTTGATGTTCTACGACTGTGAAGAAATCGATTCTGCAGCAAATGGTT
TGGTTCGCATCGAGCGGGAGCTGCCGGAGTGGCTCGCCGCTGACGTGGCCATCCTGGGTGAGCCCACCGGCGGCTATATC
GAGGCCGGCTGCCAGGGGACGCTGCGCGTTGTGATTAATGCGGCTGGATCCCGTGCGCATTCTGCACGTTCCTGGTTGGG
CGACAACGCAATCCATAAACTGGGTGCTGTGCTGGACCGGTTGGCTGCATATCGGGCGCGTACCGTCGACATCGATGGAT
GTGTCTACCGCGAGGGTCTATCTGCTGTGCGCGTCGACGGCGGTGTGGCCGGAAATGTGATTCCCGATGCGGCCTCAGTG
ACAGTCAATTACCGCTTTGCTCCTGACCGTTCGGTGGCCGCGGCGTTGCGCCATGTGCACGACGTGTTCGATGGGCTCGA
CGTACAGATCGAGCAGACCGACGCGGCGGTGGGTGCGCTGCCTGGCCTGTCGCAGCCGGCCGCCAAGGCCTTGGTCGAGG
CCGCTGACGGGCAGGTCCGTGCGAAATACGGTTGGACGGATGTGTCACGATTCGCCGCGCTGGGTGTCCCGGCGGTTAAC
TACGGCCCTGGTGACCCCAACCTGGCGCACCGGCACGACGAACGCGTGCCGGTCGTCCAGATCACCGCTGCTGTGGATAT
GTTGCGTCGATACCTCGGCGGCTGA

Upstream 100 bases:

>100_bases
GCCAGCGTCGCCAGCCCGATGCCAACCCCACCTGCAGTTCCTGTCACGGCGGTCAGGTTACTTGCTCGGCCTGGAAGACG
TCATCAGTACCCTGGTCTGC

Downstream 100 bases:

>100_bases
TCTTTGGCCGTCCGTGATCGGCATCTGGTAGCCGTTCGGCTACTGCGACAGCAGCCACTGAGATTATCCCGATAGCTGCC
AGCTTCGCAGACACAGCCGT

Product: succinyl-diaminopimelate desuccinylase

Products: NA

Alternate protein names: SDAP desuccinylase [H]

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MLDLRGDPIELTAALVDIPSESRAEARIADAVETALRAQTAGFEIVRNGNAVLARTSLHRPARVLLAGHLDTVPVAGNLP
SRCEKDVLHGCGTVDMKSGDAVFLHLAATVTEPVHDLTLMFYDCEEIDSAANGLVRIERELPEWLAADVAILGEPTGGYI
EAGCQGTLRVVINAAGSRAHSARSWLGDNAIHKLGAVLDRLAAYRARTVDIDGCVYREGLSAVRVDGGVAGNVIPDAASV
TVNYRFAPDRSVAAALRHVHDVFDGLDVQIEQTDAAVGALPGLSQPAAKALVEAADGQVRAKYGWTDVSRFAALGVPAVN
YGPGDPNLAHRHDERVPVVQITAAVDMLRRYLGG

Sequences:

>Translated_354_residues
MLDLRGDPIELTAALVDIPSESRAEARIADAVETALRAQTAGFEIVRNGNAVLARTSLHRPARVLLAGHLDTVPVAGNLP
SRCEKDVLHGCGTVDMKSGDAVFLHLAATVTEPVHDLTLMFYDCEEIDSAANGLVRIERELPEWLAADVAILGEPTGGYI
EAGCQGTLRVVINAAGSRAHSARSWLGDNAIHKLGAVLDRLAAYRARTVDIDGCVYREGLSAVRVDGGVAGNVIPDAASV
TVNYRFAPDRSVAAALRHVHDVFDGLDVQIEQTDAAVGALPGLSQPAAKALVEAADGQVRAKYGWTDVSRFAALGVPAVN
YGPGDPNLAHRHDERVPVVQITAAVDMLRRYLGG
>Mature_354_residues
MLDLRGDPIELTAALVDIPSESRAEARIADAVETALRAQTAGFEIVRNGNAVLARTSLHRPARVLLAGHLDTVPVAGNLP
SRCEKDVLHGCGTVDMKSGDAVFLHLAATVTEPVHDLTLMFYDCEEIDSAANGLVRIERELPEWLAADVAILGEPTGGYI
EAGCQGTLRVVINAAGSRAHSARSWLGDNAIHKLGAVLDRLAAYRARTVDIDGCVYREGLSAVRVDGGVAGNVIPDAASV
TVNYRFAPDRSVAAALRHVHDVFDGLDVQIEQTDAAVGALPGLSQPAAKALVEAADGQVRAKYGWTDVSRFAALGVPAVN
YGPGDPNLAHRHDERVPVVQITAAVDMLRRYLGG

Specific function: Unknown

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001261
- InterPro:   IPR002933
- InterPro:   IPR011650
- InterPro:   IPR010174 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.18 [H]

Molecular weight: Translated: 37450; Mature: 37450

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS00758 ARGE_DAPE_CPG2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLRGDPIELTAALVDIPSESRAEARIADAVETALRAQTAGFEIVRNGNAVLARTSLHR
CCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEECCCCC
PARVLLAGHLDTVPVAGNLPSRCEKDVLHGCGTVDMKSGDAVFLHLAATVTEPVHDLTLM
CCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCEEEEEEEHHHHCCHHHHEEE
FYDCEEIDSAANGLVRIERELPEWLAADVAILGEPTGGYIEAGCQGTLRVVINAAGSRAH
EECHHHHHHHHCCEEEEHHHHHHHHHCCEEEEECCCCCEEECCCCEEEEEEEECCCCCHH
SARSWLGDNAIHKLGAVLDRLAAYRARTVDIDGCVYREGLSAVRVDGGVAGNVIPDAASV
HHHHHHCCHHHHHHHHHHHHHHHHHHCEEECCCHHHHCCCCEEEECCCCCCCCCCCCEEE
TVNYRFAPDRSVAAALRHVHDVFDGLDVQIEQTDAAVGALPGLSQPAAKALVEAADGQVR
EEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCHHHHHHHHHCCCCEE
AKYGWTDVSRFAALGVPAVNYGPGDPNLAHRHDERVPVVQITAAVDMLRRYLGG
EEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCC
>Mature Secondary Structure
MLDLRGDPIELTAALVDIPSESRAEARIADAVETALRAQTAGFEIVRNGNAVLARTSLHR
CCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEECCCCC
PARVLLAGHLDTVPVAGNLPSRCEKDVLHGCGTVDMKSGDAVFLHLAATVTEPVHDLTLM
CCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCEEEEEEEHHHHCCHHHHEEE
FYDCEEIDSAANGLVRIERELPEWLAADVAILGEPTGGYIEAGCQGTLRVVINAAGSRAH
EECHHHHHHHHCCEEEEHHHHHHHHHCCEEEEECCCCCEEECCCCEEEEEEEECCCCCHH
SARSWLGDNAIHKLGAVLDRLAAYRARTVDIDGCVYREGLSAVRVDGGVAGNVIPDAASV
HHHHHHCCHHHHHHHHHHHHHHHHHHCEEECCCHHHHCCCCEEEECCCCCCCCCCCCEEE
TVNYRFAPDRSVAAALRHVHDVFDGLDVQIEQTDAAVGALPGLSQPAAKALVEAADGQVR
EEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCHHHHHHHHHCCCCEE
AKYGWTDVSRFAALGVPAVNYGPGDPNLAHRHDERVPVVQITAAVDMLRRYLGG
EEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7881553; 12948626; 7592354 [H]