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The map label for this gene is rbsC [H]

Identifier: 221229600

GI number: 221229600

Start: 493948

End: 495756

Strand: Reverse

Name: rbsC [H]

Synonym: MLBr_00397

Alternate gene names: 221229600

Gene position: 495756-493948 (Counterclockwise)

Preceding gene: 221229601

Following gene: 221229599

Centisome position: 15.17

GC content: 55.89

Gene sequence:

>1809_bases
GTGGATCACACGACGAAGTGTGACGCCGAACAATACTTCCAAGCGATTGTCACATCAATGGCCGACGGAGTCATTGTGGT
AGACATCGACGGACGGATTGAGTCCATTAATCCCGCCGCTACTCGGATATTGGGCTTACGAGCCCACGATGTCGTTGACA
TGAAGCATGGCCATCCATTCTGCTTCTACGATACAGACAATCAGCGGGTTGATCTTGAGCGTGAGGTCATGCGCGTCGTA
CGACGCGAAGTAACAACGGTAAGCAAAGTCGTCGGCATTGACCAACACAGTGGCCAGCGGTTATGGCTATCGGTAAACGT
GAGCCTGCTTGCGTACAAGGCTCCCCCACACTCTGCACTGGTAGTCTCGTTTTCTGACATTTCTGCCCACCACCTTTCGA
TCGAACGGCTCACCTACGAGGCAACCCACGACTGTCTCACCGGTCTTGCCAATCGCAGGTTTGCGGAAGACCAGATCACC
AAATCACTGCAGCATGACGAACGCTCTCGATTAGCTGCTGTACTGCTTCTTGACCTCGACGATTTCAAAGTGATCAACGA
CTCACTAGGCCACGACGTAGGTGACGCGGTGTTGCAGACTGTAGCGCAGCGACTACGCTCGGCTGTGCGGCCCGACGATG
TCGTCGCGCGGCTGGGCGGAGACGAGTTCATCGTACTACTCCGGGGTCCCCTTTCGGACATGAATGCTAACGACGTCGCA
AAAAGACTGCACACAACACTGTCCGAGTCACTCGTGGTCGACCAGCTCACGGTGCCTATCGGAGCGAGTGTTGGCATCCT
TGAGGTGAGACCTGACGATCGACGGCGGGCCGCCGACATTTTGCGTGATGCCGACTCCGCGATGTATGCAGCCAAGAACA
AGAAACAATGTGCCGTCACGCCGCAGCAGCTGGTACCGTTCGTCGCGCTGATCGCACTGTTTGTGTTTTTTACAGCTGCG
GCCGGAGCTAAGTTCTATGCACCATCAAATCTGCTGGTCATTCTCCAACAAACCGTGGTGCTGGCGATCGTCGGATACGG
CATGACTTTCGTTATCATGGCAGGCTCCGTTGACCTATCGGTGGGCTCGATCGTCGCATTGACTGGAGTCACCGCGGCAC
TCGTGGCTGCACAGAATCAATTCGCTGCGATCGTCACCGCCCTGCTGGTGGGGTTGGCTGCTGGGATGGTAAACGGCATC
GTTTTTGCCTACGGGAAGATTCCGTCATTCGTTAGCACCCTCGGCATGCTTCAAGTCTGCCGTGGTATCACCCTGATGAT
CAGCGACAGTTCTGCCAAACCGATGCCGTTTCACGGAATACTGGGTGCAATGGGAGCCATGCCGTGGATCCTCATCGTCT
GTCTTTTCGTCACAATCCTGGCAGGGATCTTATTCCAATTCACCATGTTTGGTCGGTGGGTCAAAGCCATCGGTGGCAAC
GAACGTGTCGCAACGTTAGCCGGGGTACCTACCCGCGGGATCAAAGTCGCGATCTTCGCGATCTGCGGACTGACAGCAGG
CCTCGGCGGTATCGTGCTTGCTTCCCGCCTCGGAGCCGGGACACCCACCGCAGCAACAGGTTTCGAGATCGATGTCATCG
CCGCAGTCGTCATCGGCGGCACGCCCTTAACCGGCGGATTGGGACGACTCAGCGGAACGCTGATCGGTGCAATAATCATC
TCGATGCTCTCCAACGGCATGGTGTTTATGGGTGTTGGGAATGCCGCCTCGCAGATCATCAAGGGAATTATGCTCGCCGC
TGCGGTTTTTGTCTTCCTACAACGCCGCAAGATCGGCATTATCAAATGA

Upstream 100 bases:

>100_bases
CACATGAACTGGGCGAATACCACAACGTCAACCGAACCGCACATCGTACTCAAGCACAGTTGTACTCTCTGATGCTGTGG
CCGACATTACATCAGAGGGC

Downstream 100 bases:

>100_bases
TAAACGTCGTATCATCCGAGTCAGCGGCACTAAAGCCAGTGCGGTCATTCACCCTGCTTAGCTAACTCCCTGTACCAAAC
AACAAACACCTGAAACAAAG

Product: putative transporter protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 602; Mature: 602

Protein sequence:

>602_residues
MDHTTKCDAEQYFQAIVTSMADGVIVVDIDGRIESINPAATRILGLRAHDVVDMKHGHPFCFYDTDNQRVDLEREVMRVV
RREVTTVSKVVGIDQHSGQRLWLSVNVSLLAYKAPPHSALVVSFSDISAHHLSIERLTYEATHDCLTGLANRRFAEDQIT
KSLQHDERSRLAAVLLLDLDDFKVINDSLGHDVGDAVLQTVAQRLRSAVRPDDVVARLGGDEFIVLLRGPLSDMNANDVA
KRLHTTLSESLVVDQLTVPIGASVGILEVRPDDRRRAADILRDADSAMYAAKNKKQCAVTPQQLVPFVALIALFVFFTAA
AGAKFYAPSNLLVILQQTVVLAIVGYGMTFVIMAGSVDLSVGSIVALTGVTAALVAAQNQFAAIVTALLVGLAAGMVNGI
VFAYGKIPSFVSTLGMLQVCRGITLMISDSSAKPMPFHGILGAMGAMPWILIVCLFVTILAGILFQFTMFGRWVKAIGGN
ERVATLAGVPTRGIKVAIFAICGLTAGLGGIVLASRLGAGTPTAATGFEIDVIAAVVIGGTPLTGGLGRLSGTLIGAIII
SMLSNGMVFMGVGNAASQIIKGIMLAAAVFVFLQRRKIGIIK

Sequences:

>Translated_602_residues
MDHTTKCDAEQYFQAIVTSMADGVIVVDIDGRIESINPAATRILGLRAHDVVDMKHGHPFCFYDTDNQRVDLEREVMRVV
RREVTTVSKVVGIDQHSGQRLWLSVNVSLLAYKAPPHSALVVSFSDISAHHLSIERLTYEATHDCLTGLANRRFAEDQIT
KSLQHDERSRLAAVLLLDLDDFKVINDSLGHDVGDAVLQTVAQRLRSAVRPDDVVARLGGDEFIVLLRGPLSDMNANDVA
KRLHTTLSESLVVDQLTVPIGASVGILEVRPDDRRRAADILRDADSAMYAAKNKKQCAVTPQQLVPFVALIALFVFFTAA
AGAKFYAPSNLLVILQQTVVLAIVGYGMTFVIMAGSVDLSVGSIVALTGVTAALVAAQNQFAAIVTALLVGLAAGMVNGI
VFAYGKIPSFVSTLGMLQVCRGITLMISDSSAKPMPFHGILGAMGAMPWILIVCLFVTILAGILFQFTMFGRWVKAIGGN
ERVATLAGVPTRGIKVAIFAICGLTAGLGGIVLASRLGAGTPTAATGFEIDVIAAVVIGGTPLTGGLGRLSGTLIGAIII
SMLSNGMVFMGVGNAASQIIKGIMLAAAVFVFLQRRKIGIIK
>Mature_602_residues
MDHTTKCDAEQYFQAIVTSMADGVIVVDIDGRIESINPAATRILGLRAHDVVDMKHGHPFCFYDTDNQRVDLEREVMRVV
RREVTTVSKVVGIDQHSGQRLWLSVNVSLLAYKAPPHSALVVSFSDISAHHLSIERLTYEATHDCLTGLANRRFAEDQIT
KSLQHDERSRLAAVLLLDLDDFKVINDSLGHDVGDAVLQTVAQRLRSAVRPDDVVARLGGDEFIVLLRGPLSDMNANDVA
KRLHTTLSESLVVDQLTVPIGASVGILEVRPDDRRRAADILRDADSAMYAAKNKKQCAVTPQQLVPFVALIALFVFFTAA
AGAKFYAPSNLLVILQQTVVLAIVGYGMTFVIMAGSVDLSVGSIVALTGVTAALVAAQNQFAAIVTALLVGLAAGMVNGI
VFAYGKIPSFVSTLGMLQVCRGITLMISDSSAKPMPFHGILGAMGAMPWILIVCLFVTILAGILFQFTMFGRWVKAIGGN
ERVATLAGVPTRGIKVAIFAICGLTAGLGGIVLASRLGAGTPTAATGFEIDVIAAVVIGGTPLTGGLGRLSGTLIGAIII
SMLSNGMVFMGVGNAASQIIKGIMLAAAVFVFLQRRKIGIIK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=308, Percent_Identity=39.2857142857143, Blast_Score=172, Evalue=7e-44,
Organism=Escherichia coli, GI1788896, Length=288, Percent_Identity=35.0694444444444, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI145693152, Length=271, Percent_Identity=36.1623616236162, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1790524, Length=272, Percent_Identity=35.6617647058824, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI87082395, Length=280, Percent_Identity=36.4285714285714, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1787541, Length=294, Percent_Identity=30.2721088435374, Blast_Score=112, Evalue=7e-26,
Organism=Escherichia coli, GI1788381, Length=305, Percent_Identity=30.4918032786885, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1789992, Length=124, Percent_Identity=47.5806451612903, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1786584, Length=160, Percent_Identity=34.375, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI145693214, Length=253, Percent_Identity=34.3873517786561, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787262, Length=187, Percent_Identity=31.5508021390374, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI1787793, Length=279, Percent_Identity=32.6164874551971, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI87081977, Length=180, Percent_Identity=36.6666666666667, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI145693134, Length=180, Percent_Identity=30, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=35.2272727272727, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788085, Length=163, Percent_Identity=32.5153374233129, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI87082007, Length=138, Percent_Identity=38.4057971014493, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787816, Length=172, Percent_Identity=30.8139534883721, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1787794, Length=276, Percent_Identity=28.9855072463768, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI87081974, Length=175, Percent_Identity=28, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788956, Length=161, Percent_Identity=32.2981366459627, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1788471, Length=278, Percent_Identity=30.2158273381295, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 63983; Mature: 63983

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS50112 PAS ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHTTKCDAEQYFQAIVTSMADGVIVVDIDGRIESINPAATRILGLRAHDVVDMKHGHPF
CCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHEECCHHCEEEECCCCEE
CFYDTDNQRVDLEREVMRVVRREVTTVSKVVGIDQHSGQRLWLSVNVSLLAYKAPPHSAL
EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEECCCCCEE
VVSFSDISAHHLSIERLTYEATHDCLTGLANRRFAEDQITKSLQHDERSRLAAVLLLDLD
EEEECCCCHHHEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEEEEECC
DFKVINDSLGHDVGDAVLQTVAQRLRSAVRPDDVVARLGGDEFIVLLRGPLSDMNANDVA
CHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEEEECCCCCCCHHHHH
KRLHTTLSESLVVDQLTVPIGASVGILEVRPDDRRRAADILRDADSAMYAAKNKKQCAVT
HHHHHHHHHHHHHHHEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PQQLVPFVALIALFVFFTAAAGAKFYAPSNLLVILQQTVVLAIVGYGMTFVIMAGSVDLS
HHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
VGSIVALTGVTAALVAAQNQFAAIVTALLVGLAAGMVNGIVFAYGKIPSFVSTLGMLQVC
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
RGITLMISDSSAKPMPFHGILGAMGAMPWILIVCLFVTILAGILFQFTMFGRWVKAIGGN
CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ERVATLAGVPTRGIKVAIFAICGLTAGLGGIVLASRLGAGTPTAATGFEIDVIAAVVIGG
CCEEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCHHHHEEHEECC
TPLTGGLGRLSGTLIGAIIISMLSNGMVFMGVGNAASQIIKGIMLAAAVFVFLQRRKIGI
CCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC
IK
CC
>Mature Secondary Structure
MDHTTKCDAEQYFQAIVTSMADGVIVVDIDGRIESINPAATRILGLRAHDVVDMKHGHPF
CCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHEECCHHCEEEECCCCEE
CFYDTDNQRVDLEREVMRVVRREVTTVSKVVGIDQHSGQRLWLSVNVSLLAYKAPPHSAL
EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEECCCCCEE
VVSFSDISAHHLSIERLTYEATHDCLTGLANRRFAEDQITKSLQHDERSRLAAVLLLDLD
EEEECCCCHHHEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEEEEECC
DFKVINDSLGHDVGDAVLQTVAQRLRSAVRPDDVVARLGGDEFIVLLRGPLSDMNANDVA
CHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEEEECCCCCCCHHHHH
KRLHTTLSESLVVDQLTVPIGASVGILEVRPDDRRRAADILRDADSAMYAAKNKKQCAVT
HHHHHHHHHHHHHHHEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PQQLVPFVALIALFVFFTAAAGAKFYAPSNLLVILQQTVVLAIVGYGMTFVIMAGSVDLS
HHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
VGSIVALTGVTAALVAAQNQFAAIVTALLVGLAAGMVNGIVFAYGKIPSFVSTLGMLQVC
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
RGITLMISDSSAKPMPFHGILGAMGAMPWILIVCLFVTILAGILFQFTMFGRWVKAIGGN
CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ERVATLAGVPTRGIKVAIFAICGLTAGLGGIVLASRLGAGTPTAATGFEIDVIAAVVIGG
CCEEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCHHHHEEHEECC
TPLTGGLGRLSGTLIGAIIISMLSNGMVFMGVGNAASQIIKGIMLAAAVFVFLQRRKIGI
CCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC
IK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]