Definition Halothermothrix orenii H 168 chromosome, complete genome.
Accession NC_011899
Length 2,578,146

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The map label for this gene is ygeR [H]

Identifier: 220931939

GI number: 220931939

Start: 1193272

End: 1194096

Strand: Direct

Name: ygeR [H]

Synonym: Hore_10980

Alternate gene names: 220931939

Gene position: 1193272-1194096 (Clockwise)

Preceding gene: 220931938

Following gene: 220931940

Centisome position: 46.28

GC content: 34.18

Gene sequence:

>825_bases
ATGAAATTACTTAAAAATATAATTGTTTTATTTGTTTTCATTGTATTTCTTACCAGTCTGGTTCAGGCTGCTGAAACAAC
GGTGTATACTGTAAAAAGGGGAGATACTTTATCTAAAATTGCTCATTATTTTGATGTTAATATAGAGAAAATCATCAGTT
TAAATAAAATAAACAATCCAGATGTAATAAGGATTGGTCAAAAGATAAAAATTCCTGTAAAAAAAGTTACTTATCAGGTT
AAAAGAGGCGATTCCCTATGGGAAATAGCAAAAAAATTCAGGGTTAACATAAAAACATTAATTAAAATTAATCAAATAAA
AAACCCCAGGGTTATTTATGCAGGACAGAAAATAATGATTCCAACAAATTCAGGTGAGGTCCGGTATACACTGGCTTCCC
GTTCTTATGATTCCCATTTTATCTGGCCGGTTCAGGGGAGGCTTACTTCTGAATTTGGCTGGAGAATACACCCTATCAGG
AAAGAAAAACACTTTCATACCGGAATAGATATAGCTGTTCCCATAGGTAGTCCTGTTTATGCGGCAGAAGAGGGTATTGT
TATTTATAGTGGGTGGAAGAATGGTTATGGTAACCTTGTCATCATAAAACACCGGGATAATAAACTAACATATTATGCCC
ATAATTTAAGACTCCTTGTAAAAAAAGGGGAGAGGGTCAAACAGGGAAGAATAATTGCTTTAAGCGGTAATAGTGGTGAT
TCAACAGGACCTCATTTACACTTTGAAATAAGGGTAGGTAATCGGGTAGTAAACCCACTTCAGTATTTAAATAAAAGGTA
TTTGTTAAATGGTTTCCGGGTCTGA

Upstream 100 bases:

>100_bases
TTTTTTTTAGGAATTGTGAATTACCTCCTATGTATATAATTTTTAAGTAATGGAAAAAATACATATAAATAAAATCTGTA
CTGTCTGGAGGTAACGGCAC

Downstream 100 bases:

>100_bases
AAGGGGGTTAGCATGAATAGAAAAGAAAAAATAGATACAATAGCTAAATTTGTTGCCGCCTATCCAGAATCTACTGCCAG
CCGCACTATACTAAAGAGGT

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MKLLKNIIVLFVFIVFLTSLVQAAETTVYTVKRGDTLSKIAHYFDVNIEKIISLNKINNPDVIRIGQKIKIPVKKVTYQV
KRGDSLWEIAKKFRVNIKTLIKINQIKNPRVIYAGQKIMIPTNSGEVRYTLASRSYDSHFIWPVQGRLTSEFGWRIHPIR
KEKHFHTGIDIAVPIGSPVYAAEEGIVIYSGWKNGYGNLVIIKHRDNKLTYYAHNLRLLVKKGERVKQGRIIALSGNSGD
STGPHLHFEIRVGNRVVNPLQYLNKRYLLNGFRV

Sequences:

>Translated_274_residues
MKLLKNIIVLFVFIVFLTSLVQAAETTVYTVKRGDTLSKIAHYFDVNIEKIISLNKINNPDVIRIGQKIKIPVKKVTYQV
KRGDSLWEIAKKFRVNIKTLIKINQIKNPRVIYAGQKIMIPTNSGEVRYTLASRSYDSHFIWPVQGRLTSEFGWRIHPIR
KEKHFHTGIDIAVPIGSPVYAAEEGIVIYSGWKNGYGNLVIIKHRDNKLTYYAHNLRLLVKKGERVKQGRIIALSGNSGD
STGPHLHFEIRVGNRVVNPLQYLNKRYLLNGFRV
>Mature_274_residues
MKLLKNIIVLFVFIVFLTSLVQAAETTVYTVKRGDTLSKIAHYFDVNIEKIISLNKINNPDVIRIGQKIKIPVKKVTYQV
KRGDSLWEIAKKFRVNIKTLIKINQIKNPRVIYAGQKIMIPTNSGEVRYTLASRSYDSHFIWPVQGRLTSEFGWRIHPIR
KEKHFHTGIDIAVPIGSPVYAAEEGIVIYSGWKNGYGNLVIIKHRDNKLTYYAHNLRLLVKKGERVKQGRIIALSGNSGD
STGPHLHFEIRVGNRVVNPLQYLNKRYLLNGFRV

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=202, Percent_Identity=36.1386138613861, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789099, Length=268, Percent_Identity=30.5970149253731, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI87081989, Length=117, Percent_Identity=41.8803418803419, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082297, Length=127, Percent_Identity=33.8582677165354, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 31417; Mature: 31417

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLKNIIVLFVFIVFLTSLVQAAETTVYTVKRGDTLSKIAHYFDVNIEKIISLNKINNP
CHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCHHHEEEECCCCCC
DVIRIGQKIKIPVKKVTYQVKRGDSLWEIAKKFRVNIKTLIKINQIKNPRVIYAGQKIMI
CEEEECCEEECCHHHEEEEEECCCHHHHHHHHHHCCEEEEEEEECCCCCEEEEECCEEEE
PTNSGEVRYTLASRSYDSHFIWPVQGRLTSEFGWRIHPIRKEKHFHTGIDIAVPIGSPVY
ECCCCCEEEEEECCCCCCEEEEEECCCEECCCCCEEEEECCCCCCCCCCEEEEECCCCCE
AAEEGIVIYSGWKNGYGNLVIIKHRDNKLTYYAHNLRLLVKKGERVKQGRIIALSGNSGD
ECCCCEEEEECCCCCCCCEEEEEECCCEEEEEEEEEEEEEECCCCCCCCEEEEEECCCCC
STGPHLHFEIRVGNRVVNPLQYLNKRYLLNGFRV
CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKLLKNIIVLFVFIVFLTSLVQAAETTVYTVKRGDTLSKIAHYFDVNIEKIISLNKINNP
CHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCHHHEEEECCCCCC
DVIRIGQKIKIPVKKVTYQVKRGDSLWEIAKKFRVNIKTLIKINQIKNPRVIYAGQKIMI
CEEEECCEEECCHHHEEEEEECCCHHHHHHHHHHCCEEEEEEEECCCCCEEEEECCEEEE
PTNSGEVRYTLASRSYDSHFIWPVQGRLTSEFGWRIHPIRKEKHFHTGIDIAVPIGSPVY
ECCCCCEEEEEECCCCCCEEEEEECCCEECCCCCEEEEECCCCCCCCCCEEEEECCCCCE
AAEEGIVIYSGWKNGYGNLVIIKHRDNKLTYYAHNLRLLVKKGERVKQGRIIALSGNSGD
ECCCCEEEEECCCCCCCCEEEEEECCCEEEEEEEEEEEEEECCCCCCCCEEEEEECCCCC
STGPHLHFEIRVGNRVVNPLQYLNKRYLLNGFRV
CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]