Definition | Halothermothrix orenii H 168 chromosome, complete genome. |
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Accession | NC_011899 |
Length | 2,578,146 |
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The map label for this gene is ygeR [H]
Identifier: 220931939
GI number: 220931939
Start: 1193272
End: 1194096
Strand: Direct
Name: ygeR [H]
Synonym: Hore_10980
Alternate gene names: 220931939
Gene position: 1193272-1194096 (Clockwise)
Preceding gene: 220931938
Following gene: 220931940
Centisome position: 46.28
GC content: 34.18
Gene sequence:
>825_bases ATGAAATTACTTAAAAATATAATTGTTTTATTTGTTTTCATTGTATTTCTTACCAGTCTGGTTCAGGCTGCTGAAACAAC GGTGTATACTGTAAAAAGGGGAGATACTTTATCTAAAATTGCTCATTATTTTGATGTTAATATAGAGAAAATCATCAGTT TAAATAAAATAAACAATCCAGATGTAATAAGGATTGGTCAAAAGATAAAAATTCCTGTAAAAAAAGTTACTTATCAGGTT AAAAGAGGCGATTCCCTATGGGAAATAGCAAAAAAATTCAGGGTTAACATAAAAACATTAATTAAAATTAATCAAATAAA AAACCCCAGGGTTATTTATGCAGGACAGAAAATAATGATTCCAACAAATTCAGGTGAGGTCCGGTATACACTGGCTTCCC GTTCTTATGATTCCCATTTTATCTGGCCGGTTCAGGGGAGGCTTACTTCTGAATTTGGCTGGAGAATACACCCTATCAGG AAAGAAAAACACTTTCATACCGGAATAGATATAGCTGTTCCCATAGGTAGTCCTGTTTATGCGGCAGAAGAGGGTATTGT TATTTATAGTGGGTGGAAGAATGGTTATGGTAACCTTGTCATCATAAAACACCGGGATAATAAACTAACATATTATGCCC ATAATTTAAGACTCCTTGTAAAAAAAGGGGAGAGGGTCAAACAGGGAAGAATAATTGCTTTAAGCGGTAATAGTGGTGAT TCAACAGGACCTCATTTACACTTTGAAATAAGGGTAGGTAATCGGGTAGTAAACCCACTTCAGTATTTAAATAAAAGGTA TTTGTTAAATGGTTTCCGGGTCTGA
Upstream 100 bases:
>100_bases TTTTTTTTAGGAATTGTGAATTACCTCCTATGTATATAATTTTTAAGTAATGGAAAAAATACATATAAATAAAATCTGTA CTGTCTGGAGGTAACGGCAC
Downstream 100 bases:
>100_bases AAGGGGGTTAGCATGAATAGAAAAGAAAAAATAGATACAATAGCTAAATTTGTTGCCGCCTATCCAGAATCTACTGCCAG CCGCACTATACTAAAGAGGT
Product: peptidase M23B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MKLLKNIIVLFVFIVFLTSLVQAAETTVYTVKRGDTLSKIAHYFDVNIEKIISLNKINNPDVIRIGQKIKIPVKKVTYQV KRGDSLWEIAKKFRVNIKTLIKINQIKNPRVIYAGQKIMIPTNSGEVRYTLASRSYDSHFIWPVQGRLTSEFGWRIHPIR KEKHFHTGIDIAVPIGSPVYAAEEGIVIYSGWKNGYGNLVIIKHRDNKLTYYAHNLRLLVKKGERVKQGRIIALSGNSGD STGPHLHFEIRVGNRVVNPLQYLNKRYLLNGFRV
Sequences:
>Translated_274_residues MKLLKNIIVLFVFIVFLTSLVQAAETTVYTVKRGDTLSKIAHYFDVNIEKIISLNKINNPDVIRIGQKIKIPVKKVTYQV KRGDSLWEIAKKFRVNIKTLIKINQIKNPRVIYAGQKIMIPTNSGEVRYTLASRSYDSHFIWPVQGRLTSEFGWRIHPIR KEKHFHTGIDIAVPIGSPVYAAEEGIVIYSGWKNGYGNLVIIKHRDNKLTYYAHNLRLLVKKGERVKQGRIIALSGNSGD STGPHLHFEIRVGNRVVNPLQYLNKRYLLNGFRV >Mature_274_residues MKLLKNIIVLFVFIVFLTSLVQAAETTVYTVKRGDTLSKIAHYFDVNIEKIISLNKINNPDVIRIGQKIKIPVKKVTYQV KRGDSLWEIAKKFRVNIKTLIKINQIKNPRVIYAGQKIMIPTNSGEVRYTLASRSYDSHFIWPVQGRLTSEFGWRIHPIR KEKHFHTGIDIAVPIGSPVYAAEEGIVIYSGWKNGYGNLVIIKHRDNKLTYYAHNLRLLVKKGERVKQGRIIALSGNSGD STGPHLHFEIRVGNRVVNPLQYLNKRYLLNGFRV
Specific function: Unknown
COG id: COG0739
COG function: function code M; Membrane proteins related to metalloendopeptidases
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082174, Length=202, Percent_Identity=36.1386138613861, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1789099, Length=268, Percent_Identity=30.5970149253731, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI87081989, Length=117, Percent_Identity=41.8803418803419, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI87082297, Length=127, Percent_Identity=33.8582677165354, Blast_Score=75, Evalue=4e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011055 - InterPro: IPR016047 - InterPro: IPR002886 - InterPro: IPR018392 - InterPro: IPR002482 [H]
Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]
EC number: NA
Molecular weight: Translated: 31417; Mature: 31417
Theoretical pI: Translated: 10.84; Mature: 10.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLLKNIIVLFVFIVFLTSLVQAAETTVYTVKRGDTLSKIAHYFDVNIEKIISLNKINNP CHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCHHHEEEECCCCCC DVIRIGQKIKIPVKKVTYQVKRGDSLWEIAKKFRVNIKTLIKINQIKNPRVIYAGQKIMI CEEEECCEEECCHHHEEEEEECCCHHHHHHHHHHCCEEEEEEEECCCCCEEEEECCEEEE PTNSGEVRYTLASRSYDSHFIWPVQGRLTSEFGWRIHPIRKEKHFHTGIDIAVPIGSPVY ECCCCCEEEEEECCCCCCEEEEEECCCEECCCCCEEEEECCCCCCCCCCEEEEECCCCCE AAEEGIVIYSGWKNGYGNLVIIKHRDNKLTYYAHNLRLLVKKGERVKQGRIIALSGNSGD ECCCCEEEEECCCCCCCCEEEEEECCCEEEEEEEEEEEEEECCCCCCCCEEEEEECCCCC STGPHLHFEIRVGNRVVNPLQYLNKRYLLNGFRV CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MKLLKNIIVLFVFIVFLTSLVQAAETTVYTVKRGDTLSKIAHYFDVNIEKIISLNKINNP CHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCHHHEEEECCCCCC DVIRIGQKIKIPVKKVTYQVKRGDSLWEIAKKFRVNIKTLIKINQIKNPRVIYAGQKIMI CEEEECCEEECCHHHEEEEEECCCHHHHHHHHHHCCEEEEEEEECCCCCEEEEECCEEEE PTNSGEVRYTLASRSYDSHFIWPVQGRLTSEFGWRIHPIRKEKHFHTGIDIAVPIGSPVY ECCCCCEEEEEECCCCCCEEEEEECCCEECCCCCEEEEECCCCCCCCCCEEEEECCCCCE AAEEGIVIYSGWKNGYGNLVIIKHRDNKLTYYAHNLRLLVKKGERVKQGRIIALSGNSGD ECCCCEEEEECCCCCCCCEEEEEECCCEEEEEEEEEEEEEECCCCCCCCEEEEEECCCCC STGPHLHFEIRVGNRVVNPLQYLNKRYLLNGFRV CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]