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The map label for this gene is hybD [C]

Identifier: 220931230

GI number: 220931230

Start: 395691

End: 396104

Strand: Reverse

Name: hybD [C]

Synonym: Hore_03840

Alternate gene names: 220931230

Gene position: 396104-395691 (Counterclockwise)

Preceding gene: 220931242

Following gene: 220931220

Centisome position: 15.36

GC content: 34.78

Gene sequence:

>414_bases
ATGGGGGATGATGGGGTCGGAATTCATTTAATTAAGGAATTGGAGTCAAAAAAAATACCACCAGATGTATCCTTAATTGA
TGCCGGTACTGCACCTATAAACTATCTGAAAGAAATAAGCCTTTCCAAAGAGGTAATAGCTATAGATGCTATATATGGAG
GTAAAAGTCCAGGCACAATCTATAGACTCTGTCTGGATGACTTAAAAAAATCCACCAACCCTGATCTCCATGGGTTTTCC
CTTTTTGATGTTATAAAAATGGGTCAATCAATGACAGGCTATCCGCATAAAATTACTATCTATGGAATTGAGCCAGAAAG
AATAACTTTAGGTACTAAACTTTCAAAATCAGTACAAAAGGCTGTAATGAAAGTAAAAAAAATCATCGAAGAAAAATTAT
CTCCACATATTTGA

Upstream 100 bases:

>100_bases
TTTGTAAGTTATATTATGCTTTAACTTGCATACTAATGATAATATGGGAGGAAATAAGTGTAAATATCAAATTATTATTG
TTGGGGTGGGTAATTATATT

Downstream 100 bases:

>100_bases
TTATCATAAAACTTTTACACATTAAAAGTCTTTTATATTATCGGTTTCATCATGATATTTGTCTACAAATAAATTACCCT
GGGTATCAAGGGCGGCATAC

Product: hydrogenase maturation protease

Products: NA

Alternate protein names: Hydrogenase Expression/Formation Protein; Ni Fe-Hydrogenase Maturation Factor; Hydrogenase 2 Maturation Protease; Peptidase; Ni/Fe Hydrogenase Maturation Protease; HupD Hydrogenase Related Function

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MGDDGVGIHLIKELESKKIPPDVSLIDAGTAPINYLKEISLSKEVIAIDAIYGGKSPGTIYRLCLDDLKKSTNPDLHGFS
LFDVIKMGQSMTGYPHKITIYGIEPERITLGTKLSKSVQKAVMKVKKIIEEKLSPHI

Sequences:

>Translated_137_residues
MGDDGVGIHLIKELESKKIPPDVSLIDAGTAPINYLKEISLSKEVIAIDAIYGGKSPGTIYRLCLDDLKKSTNPDLHGFS
LFDVIKMGQSMTGYPHKITIYGIEPERITLGTKLSKSVQKAVMKVKKIIEEKLSPHI
>Mature_136_residues
GDDGVGIHLIKELESKKIPPDVSLIDAGTAPINYLKEISLSKEVIAIDAIYGGKSPGTIYRLCLDDLKKSTNPDLHGFSL
FDVIKMGQSMTGYPHKITIYGIEPERITLGTKLSKSVQKAVMKVKKIIEEKLSPHI

Specific function: Protease Involved In The C-Terminal Processing Of Hybc, The Large Subunit Of Hydrogenase 2. Specifically Cleaves Off A 15 Amino Acid Peptide From The C Terminus Of The Precursor Of Hybc. [C]

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.24.- [C]

Molecular weight: Translated: 15034; Mature: 14903

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDDGVGIHLIKELESKKIPPDVSLIDAGTAPINYLKEISLSKEVIAIDAIYGGKSPGTI
CCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHCCCCCEEEEEEEECCCCCCHH
YRLCLDDLKKSTNPDLHGFSLFDVIKMGQSMTGYPHKITIYGIEPERITLGTKLSKSVQK
HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEECHHHHHHHHH
AVMKVKKIIEEKLSPHI
HHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GDDGVGIHLIKELESKKIPPDVSLIDAGTAPINYLKEISLSKEVIAIDAIYGGKSPGTI
CCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHCCCCCEEEEEEEECCCCCCHH
YRLCLDDLKKSTNPDLHGFSLFDVIKMGQSMTGYPHKITIYGIEPERITLGTKLSKSVQK
HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEECHHHHHHHHH
AVMKVKKIIEEKLSPHI
HHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA