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The map label for this gene is yvrC [H]

Identifier: 220918707

GI number: 220918707

Start: 4035764

End: 4036678

Strand: Direct

Name: yvrC [H]

Synonym: A2cp1_3615

Alternate gene names: 220918707

Gene position: 4035764-4036678 (Clockwise)

Preceding gene: 220918706

Following gene: 220918708

Centisome position: 80.24

GC content: 80.77

Gene sequence:

>915_bases
GTGCGCGCCGTAGCCGCCGGGTGCGCCGCGCTGGCGCTCGCGCTCGCGGCGCCGGCGGCGCGCGCCGGCGGGGTCGCGGA
CCTGCTGCGCCCGAGCGGCCGCGGCGCCGCCGAGGGCGGGACGGTGTGGGCCGGGCCCCGGCCCAGCGCGCCGCCCCGGC
GCGTGGTGGTGCTCGCGCCGAGCCTCACCGACGTGGTGCTGGCGCTCGGGCTGGGCGACCGGCTGGTGGGCGTGACCCAG
CTCGACGACGCGCCGGAGGTGCGGCACGTGCCGCGCGTGGGCGGCTTCATCGACCCGAACCCGGAGGCGATCCTCGGGCT
CCGCCCCGACCTCGTGCTCTGGATCTCCGACGGCGGCGCGCTCGCGGCGGTGCGCCGCGTGGCCGAGCTCTCGCAGGCGT
CGTCGCGCCCGTTCCCGGTGGTCGCCATCCCGGTGGTGAGCGTGGCCGACGTGCTCGCCACGCCGCGCATCGTGGGCGAG
GCGCTGGGCGCGCCGGCCGCGGGGGCGCGGCTCTCCGCGGAGCTCGCGGCGGAGGTGGAGCGGGTGCGGGCCCGCGCCGC
GTCGCTGCCGCGCCGGCGCGCGCTCTTCCTGGTGGGCCGCGAGCCGCTGGTGGTGGCGGGACCGGGCAGCTTCCCGGACG
AGCTGCTGCGCATCGCGGGCGCCGTGAACGTGGTGGGCGGCTCCCGGCCCTGGCCGGTGTTCCCGCTGGAGCGCGCGGTG
GCGCTCGATCCGGAGGTGGTGGTGGACGGCGCGCCGCAGGAGCCGGCCGAGGGCATCGTCCGCCTGTCCGCGATCCCGGC
GGTGCGGCGGGGCGCGGTGGTGCGCCTCCCGGACGACGCCCTGCTGCGCCCCGGGCCGCGGATGATCCGCGGGCTGGAGA
CGCTGTTCCGCGGGCTGCACCCGGAGGCGCGGTGA

Upstream 100 bases:

>100_bases
GCTCGGTCTGGCGCTTCGATCCCTCCACCGGCGAGCGCCTCGCCGCCGGCGAGATCTGCCCGGCCAGCCAGGCGGGCTGG
GCCTGGGCCGCGGACGTCGC

Downstream 100 bases:

>100_bases
GCCTGACCCGGCGCACGCGGCTCGCGCTGGCGCTCGCCGCCGGCGTGCTCGCGATCGCGGTCGCCGTGGCCATCTCCTGC
GGGCTCGGCCCGCAGCCCAT

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MRAVAAGCAALALALAAPAARAGGVADLLRPSGRGAAEGGTVWAGPRPSAPPRRVVVLAPSLTDVVLALGLGDRLVGVTQ
LDDAPEVRHVPRVGGFIDPNPEAILGLRPDLVLWISDGGALAAVRRVAELSQASSRPFPVVAIPVVSVADVLATPRIVGE
ALGAPAAGARLSAELAAEVERVRARAASLPRRRALFLVGREPLVVAGPGSFPDELLRIAGAVNVVGGSRPWPVFPLERAV
ALDPEVVVDGAPQEPAEGIVRLSAIPAVRRGAVVRLPDDALLRPGPRMIRGLETLFRGLHPEAR

Sequences:

>Translated_304_residues
MRAVAAGCAALALALAAPAARAGGVADLLRPSGRGAAEGGTVWAGPRPSAPPRRVVVLAPSLTDVVLALGLGDRLVGVTQ
LDDAPEVRHVPRVGGFIDPNPEAILGLRPDLVLWISDGGALAAVRRVAELSQASSRPFPVVAIPVVSVADVLATPRIVGE
ALGAPAAGARLSAELAAEVERVRARAASLPRRRALFLVGREPLVVAGPGSFPDELLRIAGAVNVVGGSRPWPVFPLERAV
ALDPEVVVDGAPQEPAEGIVRLSAIPAVRRGAVVRLPDDALLRPGPRMIRGLETLFRGLHPEAR
>Mature_304_residues
MRAVAAGCAALALALAAPAARAGGVADLLRPSGRGAAEGGTVWAGPRPSAPPRRVVVLAPSLTDVVLALGLGDRLVGVTQ
LDDAPEVRHVPRVGGFIDPNPEAILGLRPDLVLWISDGGALAAVRRVAELSQASSRPFPVVAIPVVSVADVLATPRIVGE
ALGAPAAGARLSAELAAEVERVRARAASLPRRRALFLVGREPLVVAGPGSFPDELLRIAGAVNVVGGSRPWPVFPLERAV
ALDPEVVVDGAPQEPAEGIVRLSAIPAVRRGAVVRLPDDALLRPGPRMIRGLETLFRGLHPEAR

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=256, Percent_Identity=25, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 31308; Mature: 31308

Theoretical pI: Translated: 11.47; Mature: 11.47

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAVAAGCAALALALAAPAARAGGVADLLRPSGRGAAEGGTVWAGPRPSAPPRRVVVLAP
CCCHHHHHHHHHHHHHCCCHHCCCHHHHHCCCCCCCCCCCEEECCCCCCCCCCEEEEECC
SLTDVVLALGLGDRLVGVTQLDDAPEVRHVPRVGGFIDPNPEAILGLRPDLVLWISDGGA
CHHHHHHHHCCCCCEEEEEECCCCCCHHCCCCCCCCCCCCCCEEEECCCCEEEEECCCCH
LAAVRRVAELSQASSRPFPVVAIPVVSVADVLATPRIVGEALGAPAAGARLSAELAAEVE
HHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHH
RVRARAASLPRRRALFLVGREPLVVAGPGSFPDELLRIAGAVNVVGGSRPWPVFPLERAV
HHHHHHHCCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHEECCCCCCCCCCCCCHHH
ALDPEVVVDGAPQEPAEGIVRLSAIPAVRRGAVVRLPDDALLRPGPRMIRGLETLFRGLH
CCCCCEEECCCCCCHHHHHEEHHHCCHHHCCCEEECCCHHHHCCCHHHHHHHHHHHHCCC
PEAR
CCCC
>Mature Secondary Structure
MRAVAAGCAALALALAAPAARAGGVADLLRPSGRGAAEGGTVWAGPRPSAPPRRVVVLAP
CCCHHHHHHHHHHHHHCCCHHCCCHHHHHCCCCCCCCCCCEEECCCCCCCCCCEEEEECC
SLTDVVLALGLGDRLVGVTQLDDAPEVRHVPRVGGFIDPNPEAILGLRPDLVLWISDGGA
CHHHHHHHHCCCCCEEEEEECCCCCCHHCCCCCCCCCCCCCCEEEECCCCEEEEECCCCH
LAAVRRVAELSQASSRPFPVVAIPVVSVADVLATPRIVGEALGAPAAGARLSAELAAEVE
HHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHH
RVRARAASLPRRRALFLVGREPLVVAGPGSFPDELLRIAGAVNVVGGSRPWPVFPLERAV
HHHHHHHCCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHEECCCCCCCCCCCCCHHH
ALDPEVVVDGAPQEPAEGIVRLSAIPAVRRGAVVRLPDDALLRPGPRMIRGLETLFRGLH
CCCCCEEECCCCCCHHHHHEEHHHCCHHHCCCEEECCCHHHHCCCHHHHHHHHHHHHCCC
PEAR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]