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The map label for this gene is nrfD [C]

Identifier: 220918378

GI number: 220918378

Start: 3650498

End: 3651739

Strand: Direct

Name: nrfD [C]

Synonym: A2cp1_3282

Alternate gene names: 220918378

Gene position: 3650498-3651739 (Clockwise)

Preceding gene: 220918377

Following gene: 220918379

Centisome position: 72.58

GC content: 70.45

Gene sequence:

>1242_bases
ATGCCCCAGATCAGCGGCTTCGCGTTCCCGAACGACGTCCACGTGTGGTGGAGCCTGATGATCGTGATGTACCCGTACAT
CACCGGCTTCGTGGCGGGCGCGTTCATCGTCACGAGCCTGTTCCACCTGTTCGGCCGCGCCGAGCTCCGGCCGGTGGCGC
GGCTCGCCATGGCGACGTCGTTCTCGTTCCTGCTGGTGGCGTCGCTGCCGCTGCAGCTCCACCTCGGGCACCCGGAGCGC
GGCCCGCTCGTGCTCGTCACGCCGCACTTCACCTCGGCCATGGCCGGCTTCGGGATGCTGTACGGCGGCTACCTGCTCGT
CCTCGCGCTGGAGGTCTGGTTCGTCTGGCGGCGCGAGATCATCGACCGGGCCCGGCGCAGCCGGGGGGCGGCGCGCGCCC
TCTACGCGACGCTCGCGCTCGGCACCTACGACACGAGCCCCGAGGCGCTGGCGGTGGACCACCGCGCCATCGCGGTGCTC
GCCGGCATCGGCCTCCCCGGCGCCTGCATGCTCCACGGGTACGTGGGCTTCATCTTCGGCGCCATCAAGGCGAACCCCTG
GTGGTCCACGCCGCTCATGCCCATCATCTTCCTGGTCTCTGCGGCGGTGTCGGGCATCGCGCTGCTCCTGGTGCTCTACC
AGGTGGTCTCGAAGCTGCGCGGCCGCCCCGCGGACCAGCCCTGCGTCTCCTCTCTGGCGCGCTGGCTGTGGCTGTTCCTG
ATCCTCACGCTCTCGCTGGAGCTGCTCGAGATCCTGGTGATGGCCTACGAGCGCTCCGACTCGTGGCTGATCATCTCGGA
GCTCATCACCACCCGCCTCGAGCTCTCGTACGTGACGGTGCAGATGATCGTGGGCGGGCTCATCCCGGTGATCCTGCTCG
CGGTGGTGGTGCTGATGAACCGCTACCTGCACCCGCGCGTCCGGAACACGCTCTCCACGGTGGCGGCGCTGCTCTGCCTG
CTGCAGGTGTTCTCGATGCGCTGGAACATCGTGATCGGCGGGCAGCTCCTCTCGAAGTCGCTGCGCGGGCTGCGCTCGCA
CTACGAGCCGGAGCTGTTCGGGCGCGAGGGCGTGCTGATGGCCGTCGCGCTCGTGCTCGCGCCGTTCGCGATCCTGTGGG
TGTTCGACCGGGTGCTCGGCATCGACCCGCCCGGCCCGGGCGAGGCGGACGCCGCCGCGCACGAGCCCGGCGGCGTCCGC
GACGCGCGCGCCCGCACCGGGCTGGGAGACGTTCACCCTTAG

Upstream 100 bases:

>100_bases
TGCGACACGCCATCGAGCACGACCGCGTCGCGGTGCTGCAGCCGCACCTGCGCACCGAGCCGCAGTGCTTCTACCTCCAC
CTCGACGGGGAGGTGCGGTG

Downstream 100 bases:

>100_bases
CGAAGGACGCGGAGGCGGGCCATGGCCGAGGGCGCGCCGGGGACGATCGAGGCGAGGCTGCAGGAGCTGACCCAGGCCGT
GGAGCGGCTCGAGCGGCGGG

Product: polysulfide reductase NrfD

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: Molybdopterin Oxidoreductase Membrane Subunit; Oxidoreductase Membrane Subunit

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MPQISGFAFPNDVHVWWSLMIVMYPYITGFVAGAFIVTSLFHLFGRAELRPVARLAMATSFSFLLVASLPLQLHLGHPER
GPLVLVTPHFTSAMAGFGMLYGGYLLVLALEVWFVWRREIIDRARRSRGAARALYATLALGTYDTSPEALAVDHRAIAVL
AGIGLPGACMLHGYVGFIFGAIKANPWWSTPLMPIIFLVSAAVSGIALLLVLYQVVSKLRGRPADQPCVSSLARWLWLFL
ILTLSLELLEILVMAYERSDSWLIISELITTRLELSYVTVQMIVGGLIPVILLAVVVLMNRYLHPRVRNTLSTVAALLCL
LQVFSMRWNIVIGGQLLSKSLRGLRSHYEPELFGREGVLMAVALVLAPFAILWVFDRVLGIDPPGPGEADAAAHEPGGVR
DARARTGLGDVHP

Sequences:

>Translated_413_residues
MPQISGFAFPNDVHVWWSLMIVMYPYITGFVAGAFIVTSLFHLFGRAELRPVARLAMATSFSFLLVASLPLQLHLGHPER
GPLVLVTPHFTSAMAGFGMLYGGYLLVLALEVWFVWRREIIDRARRSRGAARALYATLALGTYDTSPEALAVDHRAIAVL
AGIGLPGACMLHGYVGFIFGAIKANPWWSTPLMPIIFLVSAAVSGIALLLVLYQVVSKLRGRPADQPCVSSLARWLWLFL
ILTLSLELLEILVMAYERSDSWLIISELITTRLELSYVTVQMIVGGLIPVILLAVVVLMNRYLHPRVRNTLSTVAALLCL
LQVFSMRWNIVIGGQLLSKSLRGLRSHYEPELFGREGVLMAVALVLAPFAILWVFDRVLGIDPPGPGEADAAAHEPGGVR
DARARTGLGDVHP
>Mature_412_residues
PQISGFAFPNDVHVWWSLMIVMYPYITGFVAGAFIVTSLFHLFGRAELRPVARLAMATSFSFLLVASLPLQLHLGHPERG
PLVLVTPHFTSAMAGFGMLYGGYLLVLALEVWFVWRREIIDRARRSRGAARALYATLALGTYDTSPEALAVDHRAIAVLA
GIGLPGACMLHGYVGFIFGAIKANPWWSTPLMPIIFLVSAAVSGIALLLVLYQVVSKLRGRPADQPCVSSLARWLWLFLI
LTLSLELLEILVMAYERSDSWLIISELITTRLELSYVTVQMIVGGLIPVILLAVVVLMNRYLHPRVRNTLSTVAALLCLL
QVFSMRWNIVIGGQLLSKSLRGLRSHYEPELFGREGVLMAVALVLAPFAILWVFDRVLGIDPPGPGEADAAAHEPGGVRD
ARARTGLGDVHP

Specific function: Probably Involved In The Transfer Of Electrons From The Quinone Pool To The Type-C Cytochromes. [C]

COG id: COG4881

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45342; Mature: 45210

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQISGFAFPNDVHVWWSLMIVMYPYITGFVAGAFIVTSLFHLFGRAELRPVARLAMATS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
FSFLLVASLPLQLHLGHPERGPLVLVTPHFTSAMAGFGMLYGGYLLVLALEVWFVWRREI
HHHHHHHHCCCEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDRARRSRGAARALYATLALGTYDTSPEALAVDHRAIAVLAGIGLPGACMLHGYVGFIFG
HHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
AIKANPWWSTPLMPIIFLVSAAVSGIALLLVLYQVVSKLRGRPADQPCVSSLARWLWLFL
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
ILTLSLELLEILVMAYERSDSWLIISELITTRLELSYVTVQMIVGGLIPVILLAVVVLMN
HHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYLHPRVRNTLSTVAALLCLLQVFSMRWNIVIGGQLLSKSLRGLRSHYEPELFGREGVLM
HHCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHCCCCCCCCCCHHHH
AVALVLAPFAILWVFDRVLGIDPPGPGEADAAAHEPGGVRDARARTGLGDVHP
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC
>Mature Secondary Structure 
PQISGFAFPNDVHVWWSLMIVMYPYITGFVAGAFIVTSLFHLFGRAELRPVARLAMATS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
FSFLLVASLPLQLHLGHPERGPLVLVTPHFTSAMAGFGMLYGGYLLVLALEVWFVWRREI
HHHHHHHHCCCEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDRARRSRGAARALYATLALGTYDTSPEALAVDHRAIAVLAGIGLPGACMLHGYVGFIFG
HHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
AIKANPWWSTPLMPIIFLVSAAVSGIALLLVLYQVVSKLRGRPADQPCVSSLARWLWLFL
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
ILTLSLELLEILVMAYERSDSWLIISELITTRLELSYVTVQMIVGGLIPVILLAVVVLMN
HHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYLHPRVRNTLSTVAALLCLLQVFSMRWNIVIGGQLLSKSLRGLRSHYEPELFGREGVLM
HHCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHCCCCCCCCCCHHHH
AVALVLAPFAILWVFDRVLGIDPPGPGEADAAAHEPGGVRDARARTGLGDVHP
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA