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The map label for this gene is yiaN [C]

Identifier: 220918179

GI number: 220918179

Start: 3403768

End: 3405687

Strand: Reverse

Name: yiaN [C]

Synonym: A2cp1_3082

Alternate gene names: 220918179

Gene position: 3405687-3403768 (Counterclockwise)

Preceding gene: 220918180

Following gene: 220918176

Centisome position: 67.72

GC content: 71.51

Gene sequence:

>1920_bases
ATGAGGAAGGAGCTCTGGTTCGGCCTCGGCATGATGGCGGTGATCGTCGCGATCACCGCGTGGATCATGCCCGCCCCGGC
GCAGATGACCGGCGGCCACCTCGGGCTGCTCATGCTGTCGCTCGTGGTGGTCGCGATCATGCTGGGCTTCCCCACCGCGT
TCACGCTCATGGGCATGGGCGTGCTCTTCGCGTGGCTGGCGTACCGCTTCGACAACCCCGCCATCGCCACGCAGCAGACG
CTCGACCTCATGGTCCAGCGGACCTACGCGGTGATGACGAACGACGTCCTCATCTCGATCCCGCTGTTCGTGTTCATGGG
GTACCTCGTCGAGCGGGCCAACCTCATCGAGCGGCTGTTCAAGAGCCTCCACCTCGCCATGGCCTTCGTGCCGGGGTCGC
TCGCGGTCGCCACGCTCGCCACCTGCGCGCTGTTCGCGACCGCCACCGGGATCGTCGGCGCGGTGGTGACGCTCATGGGC
CTGCTCGCCTTCCCGGCGATGCTCCGCTCCGGCTACGACATCAAGCTCTCCGCGGGGGCGATCACCGCGGGCGGCTGCCT
CGGCATCCTCATCCCGCCCTCGGTGATGCTCATCCTGTACGGCGCCACCGCCGGCGTCTCGGTGGTCCAGCTGTACGCGG
GCGCGTTCTTCCCCGGCCTGCTGCTCGCCGGCCTGTACATCGCGTACGTGGTGCTGATCGCGCGGCTCCGGCCGTCGCTC
GCCCCGCCGGCCACGCTGGAGGAGCGGACGGTCACGCTGCCGGAGCCCTCTCGGATCCTGGCGGGCGGGCGGCGCCGGCT
GGCCGTCCCGGCGCTGCTCGGGGCGCTGGCGCGCCCGCGGCCCGGCGTCGGGCGCCGCTGGGCGGGGCGCCAGCTCGCCG
CCGCGCTCCTGCCGGCGGCCGCGCTGGCCGCCGGGATCGGCGTCGTGCACGGCGTCGTGACCGCCGAGCGCGTGGTGGAC
ACCGGCGGCCTCGTCGAGGTGGGCGACGGCGACGCGGCGGCCGAGGAGACGTACCAGGGGGCGGAGCTCGCGCCGCTCGA
GGACGACGGCGCTCCGGCGGAGGCCGGGGCCGAGCCGGTGCCGACCGCAGGGGACGACGCGAAGGTGGAGGAGGTCCGCG
AGGCCGGCGCGGAGGCGCGGGTGCCGGCGGCGCCGGCGGACCGCAAGCCCGCCCCGGCGGCGTTCTGGATCGCGGTCGCT
GCGGCGCTGGCCGCGCTCGCCGTGCACTACGGCATCTTCACGCTCGAGCGGCTCGAGATCCTGAAGATGCTGCTCACCAG
CTTCTTCCCCCTGACCACGCTCATCCTCGCCGTGCTCGGATCGATCGTGTTCGGGTGGGCCACGCCGACCGAGGCGGCCG
CGCTCGGCGCCGCCGGCGCGATGGTCCTCACCGGCGCCTACCGGCAGTTCAGGTGGTCGGTGCTGAAGGAGTCGGTGTTC
CTGACCGCGAAGACCACGGCCATGGTGTGCTGGCTGTTCGTGGGCTCGTCGATCTTCTCGGCGGCGTTCGCGCTGCTCGG
GGGCCAGGGGCTCATCGAGCGGTGGGTGCTCGGGCTCGACCTCACGCCCATCCAGTTCATGGTGCTGGCGCAGGCGATCA
TCTTCCTGCTCGGCTGGCCGCTGGAGTGGACCGAGATCATCGTGATCTTCATGCCCATCTTCATCCCGCTGCTCGGGCAC
TTCCAGATCGATCCGCTCTTCTTCGGCCTCCTGGTGGCGCTCAACCTCCAGACGGCGTTCCTCTCGCCCCCGGTGGCCAT
GGCGGCGTTCTACCTGAAGGGCGTCGCGCCGCGGCACGTGACCCTGAACCAGATCTTCGCCGGGATGATGCCGTTCATGG
CCATCCAGATCCTGGCGCTGGTGCTGCTCTACGTGTTCCCGCAGATCGGGCTCTGGCTGCCGCGCGTTCTCTATCGGTGA

Upstream 100 bases:

>100_bases
AGGACCTCGCCGCCCTCGACGCGCTGGTGGTCCGGCGCGAGGGCGGCGCCGCGGGGCCGGGCGACGAGCCGCCCGAGGCG
GGTCGGAAGGACACGCGGCC

Downstream 100 bases:

>100_bases
ACGCGCCAGGGCGCGGTGCGCCGCCGTACCGCCGGGGTGGACCGGCGCCGCTCAGCGCGGCGACGAGGGGCCGGTCCAGG
GCTCGTGGGCGAGCCCGTAC

Product: TRAP dicarboxylate transporter subunit DctM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 639; Mature: 639

Protein sequence:

>639_residues
MRKELWFGLGMMAVIVAITAWIMPAPAQMTGGHLGLLMLSLVVVAIMLGFPTAFTLMGMGVLFAWLAYRFDNPAIATQQT
LDLMVQRTYAVMTNDVLISIPLFVFMGYLVERANLIERLFKSLHLAMAFVPGSLAVATLATCALFATATGIVGAVVTLMG
LLAFPAMLRSGYDIKLSAGAITAGGCLGILIPPSVMLILYGATAGVSVVQLYAGAFFPGLLLAGLYIAYVVLIARLRPSL
APPATLEERTVTLPEPSRILAGGRRRLAVPALLGALARPRPGVGRRWAGRQLAAALLPAAALAAGIGVVHGVVTAERVVD
TGGLVEVGDGDAAAEETYQGAELAPLEDDGAPAEAGAEPVPTAGDDAKVEEVREAGAEARVPAAPADRKPAPAAFWIAVA
AALAALAVHYGIFTLERLEILKMLLTSFFPLTTLILAVLGSIVFGWATPTEAAALGAAGAMVLTGAYRQFRWSVLKESVF
LTAKTTAMVCWLFVGSSIFSAAFALLGGQGLIERWVLGLDLTPIQFMVLAQAIIFLLGWPLEWTEIIVIFMPIFIPLLGH
FQIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVAPRHVTLNQIFAGMMPFMAIQILALVLLYVFPQIGLWLPRVLYR

Sequences:

>Translated_639_residues
MRKELWFGLGMMAVIVAITAWIMPAPAQMTGGHLGLLMLSLVVVAIMLGFPTAFTLMGMGVLFAWLAYRFDNPAIATQQT
LDLMVQRTYAVMTNDVLISIPLFVFMGYLVERANLIERLFKSLHLAMAFVPGSLAVATLATCALFATATGIVGAVVTLMG
LLAFPAMLRSGYDIKLSAGAITAGGCLGILIPPSVMLILYGATAGVSVVQLYAGAFFPGLLLAGLYIAYVVLIARLRPSL
APPATLEERTVTLPEPSRILAGGRRRLAVPALLGALARPRPGVGRRWAGRQLAAALLPAAALAAGIGVVHGVVTAERVVD
TGGLVEVGDGDAAAEETYQGAELAPLEDDGAPAEAGAEPVPTAGDDAKVEEVREAGAEARVPAAPADRKPAPAAFWIAVA
AALAALAVHYGIFTLERLEILKMLLTSFFPLTTLILAVLGSIVFGWATPTEAAALGAAGAMVLTGAYRQFRWSVLKESVF
LTAKTTAMVCWLFVGSSIFSAAFALLGGQGLIERWVLGLDLTPIQFMVLAQAIIFLLGWPLEWTEIIVIFMPIFIPLLGH
FQIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVAPRHVTLNQIFAGMMPFMAIQILALVLLYVFPQIGLWLPRVLYR
>Mature_639_residues
MRKELWFGLGMMAVIVAITAWIMPAPAQMTGGHLGLLMLSLVVVAIMLGFPTAFTLMGMGVLFAWLAYRFDNPAIATQQT
LDLMVQRTYAVMTNDVLISIPLFVFMGYLVERANLIERLFKSLHLAMAFVPGSLAVATLATCALFATATGIVGAVVTLMG
LLAFPAMLRSGYDIKLSAGAITAGGCLGILIPPSVMLILYGATAGVSVVQLYAGAFFPGLLLAGLYIAYVVLIARLRPSL
APPATLEERTVTLPEPSRILAGGRRRLAVPALLGALARPRPGVGRRWAGRQLAAALLPAAALAAGIGVVHGVVTAERVVD
TGGLVEVGDGDAAAEETYQGAELAPLEDDGAPAEAGAEPVPTAGDDAKVEEVREAGAEARVPAAPADRKPAPAAFWIAVA
AALAALAVHYGIFTLERLEILKMLLTSFFPLTTLILAVLGSIVFGWATPTEAAALGAAGAMVLTGAYRQFRWSVLKESVF
LTAKTTAMVCWLFVGSSIFSAAFALLGGQGLIERWVLGLDLTPIQFMVLAQAIIFLLGWPLEWTEIIVIFMPIFIPLLGH
FQIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVAPRHVTLNQIFAGMMPFMAIQILALVLLYVFPQIGLWLPRVLYR

Specific function: Unknown

COG id: COG4664

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 67794; Mature: 67794

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKELWFGLGMMAVIVAITAWIMPAPAQMTGGHLGLLMLSLVVVAIMLGFPTAFTLMGMG
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
VLFAWLAYRFDNPAIATQQTLDLMVQRTYAVMTNDVLISIPLFVFMGYLVERANLIERLF
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
KSLHLAMAFVPGSLAVATLATCALFATATGIVGAVVTLMGLLAFPAMLRSGYDIKLSAGA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
ITAGGCLGILIPPSVMLILYGATAGVSVVQLYAGAFFPGLLLAGLYIAYVVLIARLRPSL
EECCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
APPATLEERTVTLPEPSRILAGGRRRLAVPALLGALARPRPGVGRRWAGRQLAAALLPAA
CCCCCCCCCEEECCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
ALAAGIGVVHGVVTAERVVDTGGLVEVGDGDAAAEETYQGAELAPLEDDGAPAEAGAEPV
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
PTAGDDAKVEEVREAGAEARVPAAPADRKPAPAAFWIAVAAALAALAVHYGIFTLERLEI
CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKMLLTSFFPLTTLILAVLGSIVFGWATPTEAAALGAAGAMVLTGAYRQFRWSVLKESVF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LTAKTTAMVCWLFVGSSIFSAAFALLGGQGLIERWVLGLDLTPIQFMVLAQAIIFLLGWP
EEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
LEWTEIIVIFMPIFIPLLGHFQIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVAPRHV
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCH
TLNQIFAGMMPFMAIQILALVLLYVFPQIGLWLPRVLYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRKELWFGLGMMAVIVAITAWIMPAPAQMTGGHLGLLMLSLVVVAIMLGFPTAFTLMGMG
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
VLFAWLAYRFDNPAIATQQTLDLMVQRTYAVMTNDVLISIPLFVFMGYLVERANLIERLF
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
KSLHLAMAFVPGSLAVATLATCALFATATGIVGAVVTLMGLLAFPAMLRSGYDIKLSAGA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
ITAGGCLGILIPPSVMLILYGATAGVSVVQLYAGAFFPGLLLAGLYIAYVVLIARLRPSL
EECCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
APPATLEERTVTLPEPSRILAGGRRRLAVPALLGALARPRPGVGRRWAGRQLAAALLPAA
CCCCCCCCCEEECCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
ALAAGIGVVHGVVTAERVVDTGGLVEVGDGDAAAEETYQGAELAPLEDDGAPAEAGAEPV
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
PTAGDDAKVEEVREAGAEARVPAAPADRKPAPAAFWIAVAAALAALAVHYGIFTLERLEI
CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKMLLTSFFPLTTLILAVLGSIVFGWATPTEAAALGAAGAMVLTGAYRQFRWSVLKESVF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LTAKTTAMVCWLFVGSSIFSAAFALLGGQGLIERWVLGLDLTPIQFMVLAQAIIFLLGWP
EEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
LEWTEIIVIFMPIFIPLLGHFQIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVAPRHV
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCH
TLNQIFAGMMPFMAIQILALVLLYVFPQIGLWLPRVLYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]