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The map label for this gene is 220918169

Identifier: 220918169

GI number: 220918169

Start: 3396052

End: 3396384

Strand: Direct

Name: 220918169

Synonym: A2cp1_3072

Alternate gene names: NA

Gene position: 3396052-3396384 (Clockwise)

Preceding gene: 220918168

Following gene: 220918171

Centisome position: 67.52

GC content: 72.37

Gene sequence:

>333_bases
ATGACCTCGAGCCCTGCCGAGAGCATCGAGCCACATCGCGGGCGGCTGCTCGGCCTGGCGTACCGCATGCTCGGTTCGAT
GGCCGACGCCCACGACGCGGTGCAGGAGACCTACGCGCGCTGGCACGGAGCCGACCGCGGTGGGGTGGCGGACGCGGGAG
CGTTCCTCCTGAGAACGACGACGCGGATCTGCCTCGACATGCTGAGCTCGGCGCGCGCGCGGCACGAGGAGTACGTCGGC
CCGTGGCTGCCGGAGCCGGTGCTCGACACGGCCCGCTCCGGCCGGACGCGCACACCGAGCTCGCCGAGGACCTGTCCTAC
GCGCTGCTCTTGA

Upstream 100 bases:

>100_bases
AGTGGTGGTGGGGATGATCGCCACCGCGCTGGGCGCGCTCGCGCGGGTCCGGTCCCGCCGCACCGCGTCCGCCCGCCCGG
AATGACCTGAGCTTCTGCCC

Downstream 100 bases:

>100_bases
CCCTGGACCGGCTGTCACCGCTCGAGCGCTGCGTGGTGCGCAATCCAGACAAAGTGCGGCACCTGTCCGTGGCGGCGCGC
TGAGCCCGAGGTCCGGGCGC

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigJ; RNA Polymerase ECF-Subfamily Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma Factor; ECF-Sigma Factor; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma Factor; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase ECF-Type Sigma Factor; ECF Sigma Factor; Sigma Factor Sigma; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase; RNA Polymerase Sigma Factor Sigma-70 Family Protein; Sigma-70 Factor; ECF-Family Protein RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase; RNA Polymerase Sigma-24 Factor Protein; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase ECF-Type Sigma Factor SigJ; Sigma-70 Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MTSSPAESIEPHRGRLLGLAYRMLGSMADAHDAVQETYARWHGADRGGVADAGAFLLRTTTRICLDMLSSARARHEEYVG
PWLPEPVLDTARSGRTRTPSSPRTCPTRCS

Sequences:

>Translated_110_residues
MTSSPAESIEPHRGRLLGLAYRMLGSMADAHDAVQETYARWHGADRGGVADAGAFLLRTTTRICLDMLSSARARHEEYVG
PWLPEPVLDTARSGRTRTPSSPRTCPTRCS
>Mature_109_residues
TSSPAESIEPHRGRLLGLAYRMLGSMADAHDAVQETYARWHGADRGGVADAGAFLLRTTTRICLDMLSSARARHEEYVGP
WLPEPVLDTARSGRTRTPSSPRTCPTRCS

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12041; Mature: 11909

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSPAESIEPHRGRLLGLAYRMLGSMADAHDAVQETYARWHGADRGGVADAGAFLLRTT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
TRICLDMLSSARARHEEYVGPWLPEPVLDTARSGRTRTPSSPRTCPTRCS
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TSSPAESIEPHRGRLLGLAYRMLGSMADAHDAVQETYARWHGADRGGVADAGAFLLRTT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
TRICLDMLSSARARHEEYVGPWLPEPVLDTARSGRTRTPSSPRTCPTRCS
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA