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The map label for this gene is ydeS [H]

Identifier: 220918160

GI number: 220918160

Start: 3388641

End: 3389216

Strand: Direct

Name: ydeS [H]

Synonym: A2cp1_3063

Alternate gene names: 220918160

Gene position: 3388641-3389216 (Clockwise)

Preceding gene: 220918158

Following gene: 220918164

Centisome position: 67.38

GC content: 75.52

Gene sequence:

>576_bases
GTGGCGCCCCGCCGTGGCCGCCCGCGCAGCGACGCGGCCAGACAGGCCATCCTGACGGCGGCGCTGGAGCTCGCGCGCAC
CCGGCCGCCGGCGGACGTCTCGGTCGAGGCGATCGCCGCCCAGGCCGGCGTCGGGAAGCAGACCATTTACCGTTGGTGGA
GGGGCAAGGCGGAGGTGCTCCTGGAGGCGCTCGCGGATCTGGCCGAGGCCGAGATCCTGGAGTCCGATATGGCGAGCCTG
GAGGCCGACGTCCGCGCGTTCCTCGAGGCGAGCTTCGACGCAATCGAGCACCAGCGGCTCGCGCCGGTGCTGCGTGGGCT
CATGGCCGAGGCGCAGCGCGACCCCGGGTTCGCCCGCGCCTTCCGCGCACGCTTCATCGAGCGTCGGCGCGACGCCGCCC
GGCGGCTGCTGGACCGGGCGCGTCGCCGCGGCGAGCTGGGCCGGTCTACCGACCCTGAGTTGCTGGTGGACGTCCTCTTC
GGGGCACTCTGGTACCGGCTCCTCGTAGGGCACGCCCCGCTCGACCGCGCCTTCGCCCGCGGCCTGGCGCGGGCGGTGGC
CCGGGTGGCGAGGTGA

Upstream 100 bases:

>100_bases
CTTACGAGACGATGAGGTCCGTAATGGAAATAACGAGACACGCCGTCTCGTCAAGCGATATGCTCCCCTGCGATTGTCGC
GTCCGCCCCGCCCCGCCACC

Downstream 100 bases:

>100_bases
GCCCACTGCGCACGCGCCGCCCCGGTGCGTCGGCGCTGATGCCGCGCGCGGTCGTCACGCTGCTCCTCCGCGCATCGCCT
CGGAGCGCCCACCATTCTCT

Product: regulatory protein TetR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MAPRRGRPRSDAARQAILTAALELARTRPPADVSVEAIAAQAGVGKQTIYRWWRGKAEVLLEALADLAEAEILESDMASL
EADVRAFLEASFDAIEHQRLAPVLRGLMAEAQRDPGFARAFRARFIERRRDAARRLLDRARRRGELGRSTDPELLVDVLF
GALWYRLLVGHAPLDRAFARGLARAVARVAR

Sequences:

>Translated_191_residues
MAPRRGRPRSDAARQAILTAALELARTRPPADVSVEAIAAQAGVGKQTIYRWWRGKAEVLLEALADLAEAEILESDMASL
EADVRAFLEASFDAIEHQRLAPVLRGLMAEAQRDPGFARAFRARFIERRRDAARRLLDRARRRGELGRSTDPELLVDVLF
GALWYRLLVGHAPLDRAFARGLARAVARVAR
>Mature_190_residues
APRRGRPRSDAARQAILTAALELARTRPPADVSVEAIAAQAGVGKQTIYRWWRGKAEVLLEALADLAEAEILESDMASLE
ADVRAFLEASFDAIEHQRLAPVLRGLMAEAQRDPGFARAFRARFIERRRDAARRLLDRARRRGELGRSTDPELLVDVLFG
ALWYRLLVGHAPLDRAFARGLARAVARVAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21274; Mature: 21143

Theoretical pI: Translated: 11.57; Mature: 11.57

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPRRGRPRSDAARQAILTAALELARTRPPADVSVEAIAAQAGVGKQTIYRWWRGKAEVL
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHH
LEALADLAEAEILESDMASLEADVRAFLEASFDAIEHQRLAPVLRGLMAEAQRDPGFARA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
FRARFIERRRDAARRLLDRARRRGELGRSTDPELLVDVLFGALWYRLLVGHAPLDRAFAR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
GLARAVARVAR
HHHHHHHHHHC
>Mature Secondary Structure 
APRRGRPRSDAARQAILTAALELARTRPPADVSVEAIAAQAGVGKQTIYRWWRGKAEVL
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHH
LEALADLAEAEILESDMASLEADVRAFLEASFDAIEHQRLAPVLRGLMAEAQRDPGFARA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
FRARFIERRRDAARRLLDRARRRGELGRSTDPELLVDVLFGALWYRLLVGHAPLDRAFAR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
GLARAVARVAR
HHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]