| Definition | Anaeromyxobacter dehalogenans 2CP-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011891 |
| Length | 5,029,329 |
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The map label for this gene is 220918073
Identifier: 220918073
GI number: 220918073
Start: 3293870
End: 3295255
Strand: Direct
Name: 220918073
Synonym: A2cp1_2974
Alternate gene names: NA
Gene position: 3293870-3295255 (Clockwise)
Preceding gene: 220918070
Following gene: 220918074
Centisome position: 65.49
GC content: 72.08
Gene sequence:
>1386_bases ATGACGCCCGATTTTCCACGACTGACCGACGGGTCGAGCTACGACGGCGGCTCATCGCCGGGGCCGAAGGTCACCCCGCT CGACTGGCTGAGGCTCACGGTGCGCGCGGCACGGCGCCGGAAGGTCGTCGCGATCGCGGTGTTCTCGTGCGCCTTCGCGC TCAGCCTGGCGTTCGCGGCGACGCGGAAGCCCGTATACCGCGTCTACACGACCATCCTGGCCCAGCGCTCCAGCGCGCTT CCCTCGGCCGCACGCGCGATGTTCGAGGACCTCCCCACCCGATCCGCGTGGGAGATCATCCACCGCCGCGAGAACCTGGT GGCGATCGTGAAGGAGACGCACCTCGCCGCGGGCGCGTCCGGCACCGTGGAACCCGACCTGCGCACGCGCGTCAAGCGCG CCCTGGGGATCGGACGCGCCTCGACGCCGATGGACCCGCTGGACCGGCTGGTGCTCGTGCTCGACAAGGAGCTCGAGGTC AGCACCGAGGAAGGAACCATCACGATCAAGCTCGACTGGCCCGACCCGCGACAGGCCCACGCGGTGGTCCAGGCCGCGCT GCAGAACTTCCTCGAGTCCCGTCACGTGCAGGAGGTGACGGCCATCGACGAGATCATCTCCGTCCTGCGCGGGCGCGCCG CGGTCCTCCGGAAGAACCTCGACGAGGTCATGGCCGACGTGCAGCACCGGCGCCCGCCGCCGACCCGCTCCACGGCGGCC CCGGTCGCCGCCGGCCCCAGCGAGGAGCTGGTGCGCCTGCAATCGCTGCTCGCCTCGAAGCAGCGGGCCATCGAGGATCT GGAGAACTTCCGCCGCAGGCGCATCGCCGAGGTGGAGGCACAGCTCCAGCAGGCGCTGAACGCGCTGTCGGAGGTCCATC CCACCGTCATCGGCCTTCGCCAGGAGCTCGCCGCGGCCTCGCGCGAGTCGCCGCAGATCGGGACCCTCCGCGAAGAGGAA CGGAAGCTCCGGGCGCAGGTCGTCGATCGAGCGGCGCGTGAGGGGACGACCCCGAGCGCGGCGGCGCTCTCCGCGCCGCT GGTGGCCTCGGACACCACGCGAACCGGCGACGACCCGCGGGTCGTCGAGGCCCGCGCCCAGTACGAGCAGATGAACCAGC GCCTCGGCGCGGCGCAGGTGGAGCTCGAGGCGGCGCGCGCCGCGTTCAAGTACCGGTACAACGTGGTCTGGCCGCCGCAG GTCCCGCAGTCGCCGTCCGGCAACAGCCGCCTCGAGATCGCGCTGGCCGGGCTGCTCTTCTCGCTCGCGCTCGGCCTCGC GGTGGCGGCGGCCCCGGACATCGTCCGCGGGCGCATCATGCAGCGCTGGCAGGTGGAGCGGAGCCTGGAGCTCCCCGTAC TCGGCGAGATGCGTCGTGACCGTTGA
Upstream 100 bases:
>100_bases GCACCAGGCCGGCGCGCGCGATATCCTTCGCGAATCGCCACCGGAGCCGTGCTCGGGTGAGGCGGCCCCGCACCGGCCGT CGGAAGGGATTCGGAAGCGA
Downstream 100 bases:
>100_bases ACCCCTCGCCGTTGCGCACGCCGGCGCGCGCGGGCGGCCCGATCTCCTTCCCTGGAGTGTGTCCGCAGCGCGCGCGGCAT GAGGACGCAGGCAGGCTCGT
Product: lipopolysaccharide biosynthesis protein
Products: NA
Alternate protein names: Exopolysaccharide Biosynthesis Protein; Lipopolysaccharide Biosynthesis Protein
Number of amino acids: Translated: 461; Mature: 460
Protein sequence:
>461_residues MTPDFPRLTDGSSYDGGSSPGPKVTPLDWLRLTVRAARRRKVVAIAVFSCAFALSLAFAATRKPVYRVYTTILAQRSSAL PSAARAMFEDLPTRSAWEIIHRRENLVAIVKETHLAAGASGTVEPDLRTRVKRALGIGRASTPMDPLDRLVLVLDKELEV STEEGTITIKLDWPDPRQAHAVVQAALQNFLESRHVQEVTAIDEIISVLRGRAAVLRKNLDEVMADVQHRRPPPTRSTAA PVAAGPSEELVRLQSLLASKQRAIEDLENFRRRRIAEVEAQLQQALNALSEVHPTVIGLRQELAAASRESPQIGTLREEE RKLRAQVVDRAAREGTTPSAAALSAPLVASDTTRTGDDPRVVEARAQYEQMNQRLGAAQVELEAARAAFKYRYNVVWPPQ VPQSPSGNSRLEIALAGLLFSLALGLAVAAAPDIVRGRIMQRWQVERSLELPVLGEMRRDR
Sequences:
>Translated_461_residues MTPDFPRLTDGSSYDGGSSPGPKVTPLDWLRLTVRAARRRKVVAIAVFSCAFALSLAFAATRKPVYRVYTTILAQRSSAL PSAARAMFEDLPTRSAWEIIHRRENLVAIVKETHLAAGASGTVEPDLRTRVKRALGIGRASTPMDPLDRLVLVLDKELEV STEEGTITIKLDWPDPRQAHAVVQAALQNFLESRHVQEVTAIDEIISVLRGRAAVLRKNLDEVMADVQHRRPPPTRSTAA PVAAGPSEELVRLQSLLASKQRAIEDLENFRRRRIAEVEAQLQQALNALSEVHPTVIGLRQELAAASRESPQIGTLREEE RKLRAQVVDRAAREGTTPSAAALSAPLVASDTTRTGDDPRVVEARAQYEQMNQRLGAAQVELEAARAAFKYRYNVVWPPQ VPQSPSGNSRLEIALAGLLFSLALGLAVAAAPDIVRGRIMQRWQVERSLELPVLGEMRRDR >Mature_460_residues TPDFPRLTDGSSYDGGSSPGPKVTPLDWLRLTVRAARRRKVVAIAVFSCAFALSLAFAATRKPVYRVYTTILAQRSSALP SAARAMFEDLPTRSAWEIIHRRENLVAIVKETHLAAGASGTVEPDLRTRVKRALGIGRASTPMDPLDRLVLVLDKELEVS TEEGTITIKLDWPDPRQAHAVVQAALQNFLESRHVQEVTAIDEIISVLRGRAAVLRKNLDEVMADVQHRRPPPTRSTAAP VAAGPSEELVRLQSLLASKQRAIEDLENFRRRRIAEVEAQLQQALNALSEVHPTVIGLRQELAAASRESPQIGTLREEER KLRAQVVDRAAREGTTPSAAALSAPLVASDTTRTGDDPRVVEARAQYEQMNQRLGAAQVELEAARAAFKYRYNVVWPPQV PQSPSGNSRLEIALAGLLFSLALGLAVAAAPDIVRGRIMQRWQVERSLELPVLGEMRRDR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50759; Mature: 50628
Theoretical pI: Translated: 10.34; Mature: 10.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPDFPRLTDGSSYDGGSSPGPKVTPLDWLRLTVRAARRRKVVAIAVFSCAFALSLAFAA CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TRKPVYRVYTTILAQRSSALPSAARAMFEDLPTRSAWEIIHRRENLVAIVKETHLAAGAS HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC GTVEPDLRTRVKRALGIGRASTPMDPLDRLVLVLDKELEVSTEEGTITIKLDWPDPRQAH CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEECCCCEEEEEEECCCCHHHH AVVQAALQNFLESRHVQEVTAIDEIISVLRGRAAVLRKNLDEVMADVQHRRPPPTRSTAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC PVAAGPSEELVRLQSLLASKQRAIEDLENFRRRRIAEVEAQLQQALNALSEVHPTVIGLR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QELAAASRESPQIGTLREEERKLRAQVVDRAAREGTTPSAAALSAPLVASDTTRTGDDPR HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCEECCCCCCCCCCH VVEARAQYEQMNQRLGAAQVELEAARAAFKYRYNVVWPPQVPQSPSGNSRLEIALAGLLF HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCEEHHHHHHHHH SLALGLAVAAAPDIVRGRIMQRWQVERSLELPVLGEMRRDR HHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCC >Mature Secondary Structure TPDFPRLTDGSSYDGGSSPGPKVTPLDWLRLTVRAARRRKVVAIAVFSCAFALSLAFAA CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TRKPVYRVYTTILAQRSSALPSAARAMFEDLPTRSAWEIIHRRENLVAIVKETHLAAGAS HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC GTVEPDLRTRVKRALGIGRASTPMDPLDRLVLVLDKELEVSTEEGTITIKLDWPDPRQAH CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEECCCCEEEEEEECCCCHHHH AVVQAALQNFLESRHVQEVTAIDEIISVLRGRAAVLRKNLDEVMADVQHRRPPPTRSTAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC PVAAGPSEELVRLQSLLASKQRAIEDLENFRRRRIAEVEAQLQQALNALSEVHPTVIGLR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QELAAASRESPQIGTLREEERKLRAQVVDRAAREGTTPSAAALSAPLVASDTTRTGDDPR HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCEECCCCCCCCCCH VVEARAQYEQMNQRLGAAQVELEAARAAFKYRYNVVWPPQVPQSPSGNSRLEIALAGLLF HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCEEHHHHHHHHH SLALGLAVAAAPDIVRGRIMQRWQVERSLELPVLGEMRRDR HHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA