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The map label for this gene is yqgF [C]

Identifier: 220917826

GI number: 220917826

Start: 3005953

End: 3006366

Strand: Direct

Name: yqgF [C]

Synonym: A2cp1_2727

Alternate gene names: 220917826

Gene position: 3005953-3006366 (Clockwise)

Preceding gene: 220917820

Following gene: 220917827

Centisome position: 59.77

GC content: 77.05

Gene sequence:

>414_bases
ATGCGCACGCTCGGCGTCGACCTGGGGCGGGTCCGGATCGGCCTCGCCGTGGCCGACGAGATCCTGCGGACGGCGCGCGC
GGTGACCACGGTGGTCCGCCGCACCGAGGCCGAGGACCTCGCCGCCATCGCCGAGGTGGCCCGCGACTACGAGGTCACGC
GGGCGGTGGTGGGGCTCCCGCTCAACATGGACGGCACGGAGGGCCCGTCGGCGCGGCTCGCTCGCGGCTTCGCGCCGCGG
CTGGAGGCGGCGCTCGGCGTGCCGGTGGAGCTGTTCGACGAGCGGCTCTCCTCCTTCGAGGCCGAGTCGCGGCTGCGCGC
GCGCGGCCTGTCGGCCCGCGAGCAGCGAGGCCAGGTGGACGCGGAGGCCGCGGCCGTCATCCTGCAGGGCTGGCTGGATC
GGAGGGCGCCGTGA

Upstream 100 bases:

>100_bases
TCCCGCGCGGTTGCGCGGGGCGCGCGGTCGCGCCGGAGCCCGCCGGGACGCAGCGCGGACCGTTTGACCCGGGCGCGGAC
GGCGCCTAGATTGCCGCGCC

Downstream 100 bases:

>100_bases
GGAAGGTCGTCACCCTGCTCGTGCTCCTCGCGCTCGCGGGCGCCGCGTGGGCGGCGCTCACCTGGCGCGACCTGCGATCG
TTCGGGGCGACGGCGTACGG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MRTLGVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLAAIAEVARDYEVTRAVVGLPLNMDGTEGPSARLARGFAPR
LEAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQVDAEAAAVILQGWLDRRAP

Sequences:

>Translated_137_residues
MRTLGVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLAAIAEVARDYEVTRAVVGLPLNMDGTEGPSARLARGFAPR
LEAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQVDAEAAAVILQGWLDRRAP
>Mature_137_residues
MRTLGVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLAAIAEVARDYEVTRAVVGLPLNMDGTEGPSARLARGFAPR
LEAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQVDAEAAAVILQGWLDRRAP

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=131, Percent_Identity=38.1679389312977, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_ANAD2 (B8JDZ9)

Other databases:

- EMBL:   CP001359
- RefSeq:   YP_002493130.1
- ProteinModelPortal:   B8JDZ9
- SMR:   B8JDZ9
- GeneID:   7298794
- GenomeReviews:   CP001359_GR
- KEGG:   acp:A2cp1_2727
- HOGENOM:   HBG607919
- ProtClustDB:   PRK00109
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 14835; Mature: 14835

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLGVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLAAIAEVARDYEVTRAVVGLP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
LNMDGTEGPSARLARGFAPRLEAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQVD
CCCCCCCCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
AEAAAVILQGWLDRRAP
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRTLGVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLAAIAEVARDYEVTRAVVGLP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
LNMDGTEGPSARLARGFAPRLEAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQVD
CCCCCCCCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
AEAAAVILQGWLDRRAP
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA