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The map label for this gene is rpoE [H]

Identifier: 220916916

GI number: 220916916

Start: 2027176

End: 2027694

Strand: Direct

Name: rpoE [H]

Synonym: A2cp1_1812

Alternate gene names: 220916916

Gene position: 2027176-2027694 (Clockwise)

Preceding gene: 220916911

Following gene: 220916917

Centisome position: 40.31

GC content: 79.58

Gene sequence:

>519_bases
GTGGCCGGCGGCTTCCTCCAGCGTGCGCTCGCGCAGGTCCCGTTCCTCCGCCGGAACGGGCGCCGCCTCGCGCGCAGCGC
CGCCGACGCGGACGACCTCGTGCAGGAGACGCTGGTGCGCGCGCTGGAGCGGCAGGAGGAGCTGCGCGACCCGGCCCGGC
TGCGCGGCTGGCTCGGGGCCCTGCAGCGATCCATCCACCTGAACGCGGTGCGCGGGCTGCGGCCGCGGCTGGAGGTGCTG
GAGGGCGGGCGCGCGGCGGAGGCGACGCCGGACGCGGCCCCCACCGCCGAGGAGGCGCTGCTGGCCCGCGCGCTCGGGGA
CGGGCTCTCGGCGGCGCTCGCCGCGCTGCCGCCGGAGTGGCGCGAGGCGCTGTGGCTGCGCGAGGTGGAGGATCTGTCGT
ACCAGGAGATCGCGCGCGTGCAGGGGTGCCCGGTGGGCACGGTGCGCTCGCGGCTGGCGCGGGCGCGGCGGGAGCTCGCC
GGCCGCCTGCGCGAGGAGGACCGCCATGTCGGCCTGTAG

Upstream 100 bases:

>100_bases
ACACGTCCGGCCGGCCGGAAAGTTCCCGCGCGCGCCGCTCGGGCGGGTCGCCGGGCCGGCGCCGGGAACCTTTTCGCGGC
TCCGCGTGTCTCACCCTCCG

Downstream 100 bases:

>100_bases
CCCGGAGTGGAACGAGCGCGTCTCGGCCTGGCTCGACGGCGAGGTCGAGCGGATGGAGCGGGTGCGGGTGGAGGCCCACC
TCGCCGGCTGCCCCGGCTGT

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MAGGFLQRALAQVPFLRRNGRRLARSAADADDLVQETLVRALERQEELRDPARLRGWLGALQRSIHLNAVRGLRPRLEVL
EGGRAAEATPDAAPTAEEALLARALGDGLSAALAALPPEWREALWLREVEDLSYQEIARVQGCPVGTVRSRLARARRELA
GRLREEDRHVGL

Sequences:

>Translated_172_residues
MAGGFLQRALAQVPFLRRNGRRLARSAADADDLVQETLVRALERQEELRDPARLRGWLGALQRSIHLNAVRGLRPRLEVL
EGGRAAEATPDAAPTAEEALLARALGDGLSAALAALPPEWREALWLREVEDLSYQEIARVQGCPVGTVRSRLARARRELA
GRLREEDRHVGL
>Mature_171_residues
AGGFLQRALAQVPFLRRNGRRLARSAADADDLVQETLVRALERQEELRDPARLRGWLGALQRSIHLNAVRGLRPRLEVLE
GGRAAEATPDAAPTAEEALLARALGDGLSAALAALPPEWREALWLREVEDLSYQEIARVQGCPVGTVRSRLARARRELAG
RLREEDRHVGL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=148, Percent_Identity=30.4054054054054, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19020; Mature: 18889

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGGFLQRALAQVPFLRRNGRRLARSAADADDLVQETLVRALERQEELRDPARLRGWLGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LQRSIHLNAVRGLRPRLEVLEGGRAAEATPDAAPTAEEALLARALGDGLSAALAALPPEW
HHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH
REALWLREVEDLSYQEIARVQGCPVGTVRSRLARARRELAGRLREEDRHVGL
HHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AGGFLQRALAQVPFLRRNGRRLARSAADADDLVQETLVRALERQEELRDPARLRGWLGA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LQRSIHLNAVRGLRPRLEVLEGGRAAEATPDAAPTAEEALLARALGDGLSAALAALPPEW
HHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH
REALWLREVEDLSYQEIARVQGCPVGTVRSRLARARRELAGRLREEDRHVGL
HHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]