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The map label for this gene is ycfS [H]

Identifier: 220916767

GI number: 220916767

Start: 1856371

End: 1857228

Strand: Direct

Name: ycfS [H]

Synonym: A2cp1_1662

Alternate gene names: 220916767

Gene position: 1856371-1857228 (Clockwise)

Preceding gene: 220916766

Following gene: 220916769

Centisome position: 36.91

GC content: 74.59

Gene sequence:

>858_bases
ATGCAGCCGCTCCTCGCGCTCCTCCTCGCCACGGTGCCGCTCCTCGAGCCCGCCGCCGGCGGCGCCGACGTCCTCGGCGT
GCTCGGCACGCGGATCGTGAAGCAGGGCGACTCCCTCATCGAGCTCGCCCGCGCGCACGACGTGGGCTTCAACGCCATGG
AGTCCGCGAACCCGGGGCTCGACGCCTACGTGCCGACGCCCGGCGCGGCGCTGGTGGTGCCGGCGGCCTGGATCCTGCCG
CCGTCCGCGGCGCCCGGATCGATCGTGGTGAACCTCTCGGAGATGCGGCTCTACCTGCTCCCGGGCGGCGGCGCCGCGCC
CGTCACCTACCCGGTGGGCATCGGCAAGGATCGCGCGAAGACGCCGCTGGGATCCTTCACCGTCATCGGCAAGACCGTCG
CGCCCACCTGGTACCCGCCGGCGTCGATGCGCCGCGACGACCCCACGCTCCCGGATCGCGTCCCGCCCGGCCCGGACAAT
CCGCTCGGCACGCACGCGCTGCGCCTCTCGGCGGGCAGCATCCTCATCCACGGCACCGACGAGCCGTTCGGCATCGGCCG
GAAGTTCAGCCACGGCTGCGTCCGGCTCTACCCCGAGGACATCCCGCGCCTGTTCGAGGTGGTGCCGCTGAAGACGCCGG
TCCGGATGGTCCGCGAGCCGGTCAAGATCGGCGTGCGCGGGAGCCGCGTGGTCGTGGAGGCCCACGACGATCCGGACGCG
CGGGTGGACCTCCGCGCCGAGGCGCAGCGCCAGCTCGAGCGGCGCGGCCTCGCGGCGCGCGTGGACGCGGGCAAGCTCGC
GGCCGCGCTCGAGGCGCGGCGCGGCATCCCGGTGGACGTCTCGATCGACGTGTTCTGA

Upstream 100 bases:

>100_bases
ACCTGCACCGCGAGGCGTGGCGCCCGGCGAACCCGGGTCTGCTCGTGTTCCCTTGAGCGGGGGTTGACGCGGGGGCGCCG
GCACGCGAAGGCTGGGCCCG

Downstream 100 bases:

>100_bases
GGCGCTACGGGATCGGGTCGGGGATGGGCAGCTCGGCCCGGATCCGCCAGCGCCCGTCCTTCCCGCGCCGCCACACGGCC
AGGTAGCGTCCCGTCACCGT

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MQPLLALLLATVPLLEPAAGGADVLGVLGTRIVKQGDSLIELARAHDVGFNAMESANPGLDAYVPTPGAALVVPAAWILP
PSAAPGSIVVNLSEMRLYLLPGGGAAPVTYPVGIGKDRAKTPLGSFTVIGKTVAPTWYPPASMRRDDPTLPDRVPPGPDN
PLGTHALRLSAGSILIHGTDEPFGIGRKFSHGCVRLYPEDIPRLFEVVPLKTPVRMVREPVKIGVRGSRVVVEAHDDPDA
RVDLRAEAQRQLERRGLAARVDAGKLAAALEARRGIPVDVSIDVF

Sequences:

>Translated_285_residues
MQPLLALLLATVPLLEPAAGGADVLGVLGTRIVKQGDSLIELARAHDVGFNAMESANPGLDAYVPTPGAALVVPAAWILP
PSAAPGSIVVNLSEMRLYLLPGGGAAPVTYPVGIGKDRAKTPLGSFTVIGKTVAPTWYPPASMRRDDPTLPDRVPPGPDN
PLGTHALRLSAGSILIHGTDEPFGIGRKFSHGCVRLYPEDIPRLFEVVPLKTPVRMVREPVKIGVRGSRVVVEAHDDPDA
RVDLRAEAQRQLERRGLAARVDAGKLAAALEARRGIPVDVSIDVF
>Mature_285_residues
MQPLLALLLATVPLLEPAAGGADVLGVLGTRIVKQGDSLIELARAHDVGFNAMESANPGLDAYVPTPGAALVVPAAWILP
PSAAPGSIVVNLSEMRLYLLPGGGAAPVTYPVGIGKDRAKTPLGSFTVIGKTVAPTWYPPASMRRDDPTLPDRVPPGPDN
PLGTHALRLSAGSILIHGTDEPFGIGRKFSHGCVRLYPEDIPRLFEVVPLKTPVRMVREPVKIGVRGSRVVVEAHDDPDA
RVDLRAEAQRQLERRGLAARVDAGKLAAALEARRGIPVDVSIDVF

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=276, Percent_Identity=37.6811594202899, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI1787040, Length=309, Percent_Identity=35.9223300970874, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1788299, Length=261, Percent_Identity=37.9310344827586, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI1787968, Length=281, Percent_Identity=37.0106761565836, Blast_Score=133, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 30091; Mature: 30091

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPLLALLLATVPLLEPAAGGADVLGVLGTRIVKQGDSLIELARAHDVGFNAMESANPGL
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHCCCCCC
DAYVPTPGAALVVPAAWILPPSAAPGSIVVNLSEMRLYLLPGGGAAPVTYPVGIGKDRAK
EEEECCCCCEEEECEEEEECCCCCCCEEEEEEEHEEEEEECCCCCCCEEEECCCCCCCCC
TPLGSFTVIGKTVAPTWYPPASMRRDDPTLPDRVPPGPDNPLGTHALRLSAGSILIHGTD
CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECC
EPFGIGRKFSHGCVRLYPEDIPRLFEVVPLKTPVRMVREPVKIGVRGSRVVVEAHDDPDA
CCCCCCCCCCCCEEEECHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC
RVDLRAEAQRQLERRGLAARVDAGKLAAALEARRGIPVDVSIDVF
EEEEHHHHHHHHHHCCCEEECCHHHHHHHHHHHCCCCEEEEEEEC
>Mature Secondary Structure
MQPLLALLLATVPLLEPAAGGADVLGVLGTRIVKQGDSLIELARAHDVGFNAMESANPGL
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHCCCCCC
DAYVPTPGAALVVPAAWILPPSAAPGSIVVNLSEMRLYLLPGGGAAPVTYPVGIGKDRAK
EEEECCCCCEEEECEEEEECCCCCCCEEEEEEEHEEEEEECCCCCCCEEEECCCCCCCCC
TPLGSFTVIGKTVAPTWYPPASMRRDDPTLPDRVPPGPDNPLGTHALRLSAGSILIHGTD
CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECC
EPFGIGRKFSHGCVRLYPEDIPRLFEVVPLKTPVRMVREPVKIGVRGSRVVVEAHDDPDA
CCCCCCCCCCCCEEEECHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC
RVDLRAEAQRQLERRGLAARVDAGKLAAALEARRGIPVDVSIDVF
EEEEHHHHHHHHHHCCCEEECCHHHHHHHHHHHCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]