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The map label for this gene is scoB [H]

Identifier: 220916702

GI number: 220916702

Start: 1783745

End: 1784401

Strand: Direct

Name: scoB [H]

Synonym: A2cp1_1596

Alternate gene names: 220916702

Gene position: 1783745-1784401 (Clockwise)

Preceding gene: 220916701

Following gene: 220916703

Centisome position: 35.47

GC content: 69.56

Gene sequence:

>657_bases
ATGCCGCTCAAGCGAGAGCAGATCGCCGCGCGCGTGGCCCGCGAGCTCCGCGACGGCTTCTACGTGAACCTCGGCATCGG
GATGCCCACGCTCGTCTCCAACTTCGTTCCGCCGGGCGTCGAGGTGGTGCTGCAGTCGGAGAACGGCATCCTGGGCGTGG
GGCCGTACCCGCGCGAGGAAGAGCTGGACGCGGACCTCATCAACGCCGGGAAGGAGACCGTGACGGTGGTGAAGGGCGCG
GCGTTCTTCTCCTCCGCCGAGTCGTTCGCGATGATCCGGGGCGGCCACATCGACCTCGCCATCCTCGGCGCGCTCGAGGT
GTCGGAGCGCGGCGACCTCGCCAACTGGCTCGTGCCCGGCAAGATGGTGAAGGGGATGGGCGGCGGGATGGACCTCGTCG
CCGGGGCGAAGCGGGTGGTGGTGATGATGGAGCACGCCACCAAGGACGGGAAGCCGAAGATCCTCCGGCAGTGCACGCTG
CCCATCACCGGCCTGCGCTGCGTCTCGTCGATCTGCACCGATCGCGCCTGGCTGGACGTGAGCCAGGACGGCCTGATCCT
GCGCGAGCTCGCGCCGGGTGAGACGGTCGAGTCGGTGCAGGCGCTCACCGAGCCGAAGCTCATCGTGGCGCCCGACCTGC
GGTCCATGCAGGCCTGA

Upstream 100 bases:

>100_bases
CCAGCATCTACGTGAGGCGGGTGGTCCGCGGGGAGCGGTACGAGAAGTGGATCGAGCGGCGGACGATCCGTCCGGCGACG
GCGTAGGGAGGATCGGAACG

Downstream 100 bases:

>100_bases
GCGCCGCCGCCCCGGGCGCGGGGCGGGGAGGGCACCCGTGGCCGGTCCCCTGTTCACGCTCACCACCGACTTCGGCGCCG
GCTCGGGGTTCCCGGCGCAG

Product: 3-oxoacid CoA-transferase subunit B

Products: NA

Alternate protein names: OXCT B; Succinyl CoA:3-oxoacid CoA-transferase [H]

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MPLKREQIAARVARELRDGFYVNLGIGMPTLVSNFVPPGVEVVLQSENGILGVGPYPREEELDADLINAGKETVTVVKGA
AFFSSAESFAMIRGGHIDLAILGALEVSERGDLANWLVPGKMVKGMGGGMDLVAGAKRVVVMMEHATKDGKPKILRQCTL
PITGLRCVSSICTDRAWLDVSQDGLILRELAPGETVESVQALTEPKLIVAPDLRSMQA

Sequences:

>Translated_218_residues
MPLKREQIAARVARELRDGFYVNLGIGMPTLVSNFVPPGVEVVLQSENGILGVGPYPREEELDADLINAGKETVTVVKGA
AFFSSAESFAMIRGGHIDLAILGALEVSERGDLANWLVPGKMVKGMGGGMDLVAGAKRVVVMMEHATKDGKPKILRQCTL
PITGLRCVSSICTDRAWLDVSQDGLILRELAPGETVESVQALTEPKLIVAPDLRSMQA
>Mature_217_residues
PLKREQIAARVARELRDGFYVNLGIGMPTLVSNFVPPGVEVVLQSENGILGVGPYPREEELDADLINAGKETVTVVKGAA
FFSSAESFAMIRGGHIDLAILGALEVSERGDLANWLVPGKMVKGMGGGMDLVAGAKRVVVMMEHATKDGKPKILRQCTLP
ITGLRCVSSICTDRAWLDVSQDGLILRELAPGETVESVQALTEPKLIVAPDLRSMQA

Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]

COG id: COG2057

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=215, Percent_Identity=60.9302325581395, Blast_Score=264, Evalue=4e-71,
Organism=Homo sapiens, GI11545841, Length=215, Percent_Identity=58.6046511627907, Blast_Score=255, Evalue=2e-68,
Organism=Escherichia coli, GI1788552, Length=213, Percent_Identity=50.7042253521127, Blast_Score=217, Evalue=6e-58,
Organism=Caenorhabditis elegans, GI17531517, Length=214, Percent_Identity=57.0093457943925, Blast_Score=243, Evalue=5e-65,
Organism=Drosophila melanogaster, GI21358325, Length=214, Percent_Identity=57.0093457943925, Blast_Score=253, Evalue=5e-68,
Organism=Drosophila melanogaster, GI24655794, Length=214, Percent_Identity=57.0093457943925, Blast_Score=253, Evalue=8e-68,

Paralogues:

None

Copy number: 369 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012791
- InterPro:   IPR004165
- InterPro:   IPR004164 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: =2.8.3.5 [H]

Molecular weight: Translated: 23322; Mature: 23190

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS01274 COA_TRANSF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLKREQIAARVARELRDGFYVNLGIGMPTLVSNFVPPGVEVVLQSENGILGVGPYPREE
CCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHCCCCCEEEEEECCCCEEECCCCCCCC
ELDADLINAGKETVTVVKGAAFFSSAESFAMIRGGHIDLAILGALEVSERGDLANWLVPG
CCCHHHHHCCCCEEEEEEHHHHHHCCCCEEEEECCCEEEEEEEEEEECCCCCCHHHCCCH
KMVKGMGGGMDLVAGAKRVVVMMEHATKDGKPKILRQCTLPITGLRCVSSICTDRAWLDV
HHHHCCCCCHHHHHCCCEEEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCEEEE
SQDGLILRELAPGETVESVQALTEPKLIVAPDLRSMQA
CCCCEEEEECCCCCHHHHHHHHCCCCEEECCCHHHCCC
>Mature Secondary Structure 
PLKREQIAARVARELRDGFYVNLGIGMPTLVSNFVPPGVEVVLQSENGILGVGPYPREE
CCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHCCCCCEEEEEECCCCEEECCCCCCCC
ELDADLINAGKETVTVVKGAAFFSSAESFAMIRGGHIDLAILGALEVSERGDLANWLVPG
CCCHHHHHCCCCEEEEEEHHHHHHCCCCEEEEECCCEEEEEEEEEEECCCCCCHHHCCCH
KMVKGMGGGMDLVAGAKRVVVMMEHATKDGKPKILRQCTLPITGLRCVSSICTDRAWLDV
HHHHCCCCCHHHHHCCCEEEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCEEEE
SQDGLILRELAPGETVESVQALTEPKLIVAPDLRSMQA
CCCCEEEEECCCCCHHHHHHHHCCCCEEECCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]