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The map label for this gene is ylbK [H]

Identifier: 220916668

GI number: 220916668

Start: 1745163

End: 1746125

Strand: Direct

Name: ylbK [H]

Synonym: A2cp1_1562

Alternate gene names: 220916668

Gene position: 1745163-1746125 (Clockwise)

Preceding gene: 220916667

Following gene: 220916671

Centisome position: 34.7

GC content: 73.42

Gene sequence:

>963_bases
ATGCGCCGCACCCATCTCGCCGCCCTCTCCGCCGCCGCGCTGGCCGCGCTCGCCGGCTGCCGCACCGCCGGCCCGGTCGC
CCCCGCCGCGCCGTTCCCGTCCGCGCCCGCCCCCGCGCCCGCAGCCCCCCCGCCGCCCGCCCCCGTGCGCGAGCCCAGGA
TCGCGCTCGTCCTCGGCGGCGGCGCCGCCCGCGGCTTCGCCCACATCGGCGTGATCCGGGTGCTCGAGCAGGAGCGGATC
CCCGTGGACCTCGTGGTCGGGACCAGCGTCGGCAGCCTCATCGGCGCGCTGTACGCGAGCGAGAAGGACTCGTTCGATCT
CGAGTGGACCGCGTTCCAGCTCCAGCAGGACGACCTGTTCGACTTCCGGCTCGTGAACGCCGTGATGGGCATGGGCTACG
CCAAGGGCGAGAAGCTCGACGCCTTCGTGCGGGCCAAGGTGAAGCAGCCCAGCATCGAGCAGCTGAAGGTGCCGTTCGCG
GCCGTGGCGACGGACCTGAACTGGGGCACGCGGGTGGTGATCGACCGCGGCCCCGTCGCGCCCGCCGTCCGCGCGTCGTC
GGCCATCCCCGGCATCTTCGAGCCCGTCGGCCACATGGGGAAGCTGCTCGTGGACGGCGGCGTGGTGGACAACATCCCCA
TCGACGTGGCCCGCGAGAAGGGCGCCGAGGTGGTGATCGCCGTGGACATCTCCGAGGACGTCGGGAACACCAGCATCCGC
AACGCGCTCGACGTGATCCTCCAGGCCACCAACATCATGTTCGCGGAGAACGTGGCGCACCGGAAGCAGGGCGCCGACGT
GCTGGTCCAGCCCGACGTGCGCGGCGTCGGCATGCTCGACTTCACGCAGAAGAAGCGCTGCGTCCAGTCCGGCATCGACG
CGGCGCGCGCCGCCATGCCCCGCGTCCGCGCCGCGATCGAGGCGTGGAAGGCGAAGCAGGCCGCCCAGCGCCCGCGGGCG
TGA

Upstream 100 bases:

>100_bases
GGCGCGCCGGATCGGGCGGGTGGATCTGTAAGGGACTGTCGGAGCGCCCCGGGCCGCCAGGGCGCTGGTGCGCGCCCGCG
TCCCGCGCCAGAATCGCCCG

Downstream 100 bases:

>100_bases
GCAAGCCGGACCCGGAGCGAGGCGGGGACCACGGCGGCGGGCGGGAACGCGAGGGCCCGAGCTGGACACGAGGGCGCGCC
CCTCACGCCGACCCCCTGCG

Product: Patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MRRTHLAALSAAALAALAGCRTAGPVAPAAPFPSAPAPAPAAPPPPAPVREPRIALVLGGGAARGFAHIGVIRVLEQERI
PVDLVVGTSVGSLIGALYASEKDSFDLEWTAFQLQQDDLFDFRLVNAVMGMGYAKGEKLDAFVRAKVKQPSIEQLKVPFA
AVATDLNWGTRVVIDRGPVAPAVRASSAIPGIFEPVGHMGKLLVDGGVVDNIPIDVAREKGAEVVIAVDISEDVGNTSIR
NALDVILQATNIMFAENVAHRKQGADVLVQPDVRGVGMLDFTQKKRCVQSGIDAARAAMPRVRAAIEAWKAKQAAQRPRA

Sequences:

>Translated_320_residues
MRRTHLAALSAAALAALAGCRTAGPVAPAAPFPSAPAPAPAAPPPPAPVREPRIALVLGGGAARGFAHIGVIRVLEQERI
PVDLVVGTSVGSLIGALYASEKDSFDLEWTAFQLQQDDLFDFRLVNAVMGMGYAKGEKLDAFVRAKVKQPSIEQLKVPFA
AVATDLNWGTRVVIDRGPVAPAVRASSAIPGIFEPVGHMGKLLVDGGVVDNIPIDVAREKGAEVVIAVDISEDVGNTSIR
NALDVILQATNIMFAENVAHRKQGADVLVQPDVRGVGMLDFTQKKRCVQSGIDAARAAMPRVRAAIEAWKAKQAAQRPRA
>Mature_320_residues
MRRTHLAALSAAALAALAGCRTAGPVAPAAPFPSAPAPAPAAPPPPAPVREPRIALVLGGGAARGFAHIGVIRVLEQERI
PVDLVVGTSVGSLIGALYASEKDSFDLEWTAFQLQQDDLFDFRLVNAVMGMGYAKGEKLDAFVRAKVKQPSIEQLKVPFA
AVATDLNWGTRVVIDRGPVAPAVRASSAIPGIFEPVGHMGKLLVDGGVVDNIPIDVAREKGAEVVIAVDISEDVGNTSIR
NALDVILQATNIMFAENVAHRKQGADVLVQPDVRGVGMLDFTQKKRCVQSGIDAARAAMPRVRAAIEAWKAKQAAQRPRA

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=193, Percent_Identity=37.8238341968912, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI116256487, Length=193, Percent_Identity=37.8238341968912, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI260656039, Length=193, Percent_Identity=37.8238341968912, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI260656043, Length=193, Percent_Identity=37.8238341968912, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI260656037, Length=193, Percent_Identity=37.8238341968912, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI148727335, Length=184, Percent_Identity=38.0434782608696, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI148727290, Length=184, Percent_Identity=38.0434782608696, Blast_Score=114, Evalue=8e-26,
Organism=Escherichia coli, GI226510936, Length=304, Percent_Identity=33.2236842105263, Blast_Score=135, Evalue=3e-33,
Organism=Caenorhabditis elegans, GI193204778, Length=181, Percent_Identity=32.0441988950276, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71997299, Length=168, Percent_Identity=33.9285714285714, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71997289, Length=168, Percent_Identity=33.9285714285714, Blast_Score=86, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6323581, Length=179, Percent_Identity=30.7262569832402, Blast_Score=102, Evalue=9e-23,
Organism=Drosophila melanogaster, GI28571388, Length=192, Percent_Identity=35.4166666666667, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI281376913, Length=192, Percent_Identity=35.4166666666667, Blast_Score=83, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 33670; Mature: 33670

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRTHLAALSAAALAALAGCRTAGPVAPAAPFPSAPAPAPAAPPPPAPVREPRIALVLGG
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
GAARGFAHIGVIRVLEQERIPVDLVVGTSVGSLIGALYASEKDSFDLEWTAFQLQQDDLF
CCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCH
DFRLVNAVMGMGYAKGEKLDAFVRAKVKQPSIEQLKVPFAAVATDLNWGTRVVIDRGPVA
HHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHCCHHHHHCCCCCCEEEEEECCCCC
PAVRASSAIPGIFEPVGHMGKLLVDGGVVDNIPIDVAREKGAEVVIAVDISEDVGNTSIR
HHHHHCCCCCHHHHHHHHHHHEEECCCCCCCCCCHHHHCCCCEEEEEEECCCCCCCHHHH
NALDVILQATNIMFAENVAHRKQGADVLVQPDVRGVGMLDFTQKKRCVQSGIDAARAAMP
HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHCHHHHHHHHH
RVRAAIEAWKAKQAAQRPRA
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRRTHLAALSAAALAALAGCRTAGPVAPAAPFPSAPAPAPAAPPPPAPVREPRIALVLGG
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
GAARGFAHIGVIRVLEQERIPVDLVVGTSVGSLIGALYASEKDSFDLEWTAFQLQQDDLF
CCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCH
DFRLVNAVMGMGYAKGEKLDAFVRAKVKQPSIEQLKVPFAAVATDLNWGTRVVIDRGPVA
HHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHCCHHHHHCCCCCCEEEEEECCCCC
PAVRASSAIPGIFEPVGHMGKLLVDGGVVDNIPIDVAREKGAEVVIAVDISEDVGNTSIR
HHHHHCCCCCHHHHHHHHHHHEEECCCCCCCCCCHHHHCCCCEEEEEEECCCCCCCHHHH
NALDVILQATNIMFAENVAHRKQGADVLVQPDVRGVGMLDFTQKKRCVQSGIDAARAAMP
HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHCHHHHHHHHH
RVRAAIEAWKAKQAAQRPRA
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]