Click here to switch to the map view.

The map label for this gene is nosD [H]

Identifier: 220916664

GI number: 220916664

Start: 1741518

End: 1742894

Strand: Direct

Name: nosD [H]

Synonym: A2cp1_1558

Alternate gene names: 220916664

Gene position: 1741518-1742894 (Clockwise)

Preceding gene: 220916663

Following gene: 220916665

Centisome position: 34.63

GC content: 74.58

Gene sequence:

>1377_bases
ATGGACGCCGTCGCGCCGCTCCTCGCCGTCCTCCTCGCCCAGGGCGACATGGCGGCCATCCCCGCCGGCAACCTGGAGGG
GCGCCCGCCGCCCGGGGAGACGTCGCCGCTGCAGGCCAGGGTGGACGCGGCTGCGCCGGGCGAGCGGATCGAGGTCGGCC
CCGGCACGTACGAGGGCGACCTCTACCTCGACCGTCCGGTCCACCTCGCCGGGCGCGGCCGCCCGCGGCTGGTGGGATCG
GGCCGGGGCAGCGTGGTGCGCGTCCGGGCGCCCGGGGTGGTGGTGGAGGGCTTCGACGTCGACGGGCGCGAGGGCGGCGA
CCTGGGCCGCGACTCGGCCGGCGTCCACGTCGCGGCCCGCGACGCAGTGATCCGCGACTGCCGCATCGGGCGCGCGCTGT
TCGGGATCTACCTGCGCGAGGCGAACGGCGCGCGCATCGAGGGGAACGTGGTGACGGGGATCCGCTCGAAGGAGCCGGGC
GAGAAGGGCTCCGGCATCCACGTCTGGAACACCGACGGGTTCACGCTCGAGCGCAACGAGATCCGCGACGCCCGCGACGG
CTTCTACATCCAGTCCTCCCCGCACGGCGTCGTCCGCGGCAACGTCGCGCGCGAGCTCCGGTACGCGCTGCACTACATGT
TCTCGGACGACAACGTCTTCGAGGACAACCTGTTCGAGCGCTCGGACGCCGGCGCCGTCCTGATGTACTCGCGCCGGATC
GCGTTCCGCCGCAACCGATTCCTGCACAACCGCGGCTTCGCCTCGGTGGGGCTCCTCTACAAGGCCTGCGACGACGTGAT
CGCCGAGGACAACCTCATCGCCGACAACGCCCGCGGCGTGTTCCTGGAGGGCTCGTACCGGGACGTCTTCCGCCGCAACG
TGATCGCCGAGTCCGACGCGGCCATCGTGCTGTACGACTCCTGCGGCGGCGTCCGCTTCGAGGGCAACGCGTTCGTCGGC
AACCTCACCACGCTCGACCTCGTGGGCCGGCGCACCGACACCGGGTTCGACGGCAACTACTGGTCGGACGACCGCGGGCT
CGACCTCGACGGCGACGGGAGGAACGATGCGCCGCACGTCCTCGGGAGCCTGTTCGATCACCTGCGCGGCAACCTCTCCG
CCGCGGACCTGCTCGCGCAGAGCGTCGCCGCCTCGGCGCTGGCCGCCGCGGAGCGCAGCTTCCCGGTGCTGGCCCGGATC
CAGGCGGTCGATCACGCCCCGCTGGCGCGGCCGCCGGTGCTGCCGGCGGTGCCGGTGGCGCGCCCGGAGGATGGCGGCGC
GGCCGCAGCGGGCGTGGCGGGCTCGGCCGGCGCGGTGGGGCTCGGCCTGGCGGTGCTCGCGCTCGGCGGGCGGGCCGCGC
GACGGGGGCGTCCGTGA

Upstream 100 bases:

>100_bases
GCGGTGGGGTTCGCGCTGGCGGCGGCGCTCGTGCTGGGCGTGCGTGGCACGCGCCGGCGCGTCGTGGCCCTGCCGGTCCC
GGCCGGTGGGCCCTGAGGCG

Downstream 100 bases:

>100_bases
TCCGGTTCGAGGCGCTCACCAAGCGGTACGGGCGCCACCGCGCCGTCGAGGCGCTCTCGCTCGAGCTCGCCGCCGGCGAG
GTGGTGGCGCTGCTCGGGCC

Product: carbohydrate-binding and sugar hydrolysis

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 458; Mature: 458

Protein sequence:

>458_residues
MDAVAPLLAVLLAQGDMAAIPAGNLEGRPPPGETSPLQARVDAAAPGERIEVGPGTYEGDLYLDRPVHLAGRGRPRLVGS
GRGSVVRVRAPGVVVEGFDVDGREGGDLGRDSAGVHVAARDAVIRDCRIGRALFGIYLREANGARIEGNVVTGIRSKEPG
EKGSGIHVWNTDGFTLERNEIRDARDGFYIQSSPHGVVRGNVARELRYALHYMFSDDNVFEDNLFERSDAGAVLMYSRRI
AFRRNRFLHNRGFASVGLLYKACDDVIAEDNLIADNARGVFLEGSYRDVFRRNVIAESDAAIVLYDSCGGVRFEGNAFVG
NLTTLDLVGRRTDTGFDGNYWSDDRGLDLDGDGRNDAPHVLGSLFDHLRGNLSAADLLAQSVAASALAAAERSFPVLARI
QAVDHAPLARPPVLPAVPVARPEDGGAAAAGVAGSAGAVGLGLAVLALGGRAARRGRP

Sequences:

>Translated_458_residues
MDAVAPLLAVLLAQGDMAAIPAGNLEGRPPPGETSPLQARVDAAAPGERIEVGPGTYEGDLYLDRPVHLAGRGRPRLVGS
GRGSVVRVRAPGVVVEGFDVDGREGGDLGRDSAGVHVAARDAVIRDCRIGRALFGIYLREANGARIEGNVVTGIRSKEPG
EKGSGIHVWNTDGFTLERNEIRDARDGFYIQSSPHGVVRGNVARELRYALHYMFSDDNVFEDNLFERSDAGAVLMYSRRI
AFRRNRFLHNRGFASVGLLYKACDDVIAEDNLIADNARGVFLEGSYRDVFRRNVIAESDAAIVLYDSCGGVRFEGNAFVG
NLTTLDLVGRRTDTGFDGNYWSDDRGLDLDGDGRNDAPHVLGSLFDHLRGNLSAADLLAQSVAASALAAAERSFPVLARI
QAVDHAPLARPPVLPAVPVARPEDGGAAAAGVAGSAGAVGLGLAVLALGGRAARRGRP
>Mature_458_residues
MDAVAPLLAVLLAQGDMAAIPAGNLEGRPPPGETSPLQARVDAAAPGERIEVGPGTYEGDLYLDRPVHLAGRGRPRLVGS
GRGSVVRVRAPGVVVEGFDVDGREGGDLGRDSAGVHVAARDAVIRDCRIGRALFGIYLREANGARIEGNVVTGIRSKEPG
EKGSGIHVWNTDGFTLERNEIRDARDGFYIQSSPHGVVRGNVARELRYALHYMFSDDNVFEDNLFERSDAGAVLMYSRRI
AFRRNRFLHNRGFASVGLLYKACDDVIAEDNLIADNARGVFLEGSYRDVFRRNVIAESDAAIVLYDSCGGVRFEGNAFVG
NLTTLDLVGRRTDTGFDGNYWSDDRGLDLDGDGRNDAPHVLGSLFDHLRGNLSAADLLAQSVAASALAAAERSFPVLARI
QAVDHAPLARPPVLPAVPVARPEDGGAAAAGVAGSAGAVGLGLAVLALGGRAARRGRP

Specific function: Involved in copper processing and transport; in the assembly of the copper chromophores of nitrous oxide reductase [H]

COG id: COG3420

COG function: function code P; Nitrous oxidase accessory protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006633
- InterPro:   IPR007742
- InterPro:   IPR022441
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF05048 NosD [H]

EC number: NA

Molecular weight: Translated: 48533; Mature: 48533

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS00457 NA_SOLUT_SYMP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAVAPLLAVLLAQGDMAAIPAGNLEGRPPPGETSPLQARVDAAAPGERIEVGPGTYEGD
CCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCC
LYLDRPVHLAGRGRPRLVGSGRGSVVRVRAPGVVVEGFDVDGREGGDLGRDSAGVHVAAR
EEECCCEEECCCCCCEEEECCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEH
DAVIRDCRIGRALFGIYLREANGARIEGNVVTGIRSKEPGEKGSGIHVWNTDGFTLERNE
HHHHHHHHHHHHEEEEEEECCCCCEEECEEEECCCCCCCCCCCCCEEEECCCCEEEEHHH
IRDARDGFYIQSSPHGVVRGNVARELRYALHYMFSDDNVFEDNLFERSDAGAVLMYSRRI
HCCCCCCEEEECCCCCEEECHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEEEHHHH
AFRRNRFLHNRGFASVGLLYKACDDVIAEDNLIADNARGVFLEGSYRDVFRRNVIAESDA
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCHHHHHHHHHCCCCCC
AIVLYDSCGGVRFEGNAFVGNLTTLDLVGRRTDTGFDGNYWSDDRGLDLDGDGRNDAPHV
EEEEEECCCCEEEECCEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
LGSLFDHLRGNLSAADLLAQSVAASALAAAERSFPVLARIQAVDHAPLARPPVLPAVPVA
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHCCCCCCCCCCCCCCCCC
RPEDGGAAAAGVAGSAGAVGLGLAVLALGGRAARRGRP
CCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHCCCCC
>Mature Secondary Structure
MDAVAPLLAVLLAQGDMAAIPAGNLEGRPPPGETSPLQARVDAAAPGERIEVGPGTYEGD
CCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCC
LYLDRPVHLAGRGRPRLVGSGRGSVVRVRAPGVVVEGFDVDGREGGDLGRDSAGVHVAAR
EEECCCEEECCCCCCEEEECCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEH
DAVIRDCRIGRALFGIYLREANGARIEGNVVTGIRSKEPGEKGSGIHVWNTDGFTLERNE
HHHHHHHHHHHHEEEEEEECCCCCEEECEEEECCCCCCCCCCCCCEEEECCCCEEEEHHH
IRDARDGFYIQSSPHGVVRGNVARELRYALHYMFSDDNVFEDNLFERSDAGAVLMYSRRI
HCCCCCCEEEECCCCCEEECHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEEEHHHH
AFRRNRFLHNRGFASVGLLYKACDDVIAEDNLIADNARGVFLEGSYRDVFRRNVIAESDA
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCHHHHHHHHHCCCCCC
AIVLYDSCGGVRFEGNAFVGNLTTLDLVGRRTDTGFDGNYWSDDRGLDLDGDGRNDAPHV
EEEEEECCCCEEEECCEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
LGSLFDHLRGNLSAADLLAQSVAASALAAAERSFPVLARIQAVDHAPLARPPVLPAVPVA
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHCCCCCCCCCCCCCCCCC
RPEDGGAAAAGVAGSAGAVGLGLAVLALGGRAARRGRP
CCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2170125 [H]