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The map label for this gene is yggS [C]

Identifier: 220916555

GI number: 220916555

Start: 1623109

End: 1623780

Strand: Reverse

Name: yggS [C]

Synonym: A2cp1_1449

Alternate gene names: 220916555

Gene position: 1623780-1623109 (Counterclockwise)

Preceding gene: 220916556

Following gene: 220916553

Centisome position: 32.29

GC content: 76.79

Gene sequence:

>672_bases
GTGACCATCGCCGACCGGCTCGCCGCGATCCGCGCCGACCTGCCGGCCGGCGTGACCCTGGTCGCCGTCTCGAAGACGCA
GCCGCCCGAGGCGATCCGCGAGGCCTACGCGGCCGGCCAGCGCGACTTCGGCGAGAACTACGCGCAGGAGTGGCGCGCCA
AGGCCGACGCGCTCGCCGACCTCCCCGGCCTGCGCTGGCACTTCATCGGCGGCCTGCAGACGAACAAGGCGAAGTACCTG
GCCGGCCGGGTGGCGCTGGTCCACGCCGTGGACCGCGAGGAGCTGGCGGCCGAGCTCTCGCGCCGCTTCGGGCAGAAGGG
CGCCACCGCGCGCGTGCTGCTCGAGGTGAACGTCGGCGGAGAGGCGTCGAAGGAGGGCTGCCCGCCGGACCGCGTCGAGG
CGCTGGCGGCGGCCGTCCGCGCGCTGCCGTCGATCGAGCTCGCCGGGCTCATGTGCATCCCGCCGCCGGAGGACGACCCG
CGCCCGCACTTCCGCGCGCTCCGGGCGCTCCGCGACCGGCTCGGCCTGCGCGAGCTGTCGATGGGGATGAGCGCCGACTG
GCGGATCGCGGTCGAGGAGGGCGCCACCCTGGTCCGCGTCGGCAGCGCCATCTTCGGCGCGCGGCCGCCGCACGGGGCGC
GGGGCGGCGCCGGCCCGGCTACAGCGTCTTGA

Upstream 100 bases:

>100_bases
AGGAGGTCCGCGGCAGCGTGTCGAACGTCGTGGGCCTGCCGCTCGCCGAGACGGCCGCGCTGCTCCGCCGCGCCGGCTTC
CCGCTGCCGTGGGAGCGCCC

Downstream 100 bases:

>100_bases
GGCGCAGGCGGCCGGCCTCGGTCACCACCACCGCGAAGTCCTGCCCGCAGTAGAAGCAGCGGACCTCGTCTCCGTCGCCG
AAGCCGTCGTCGTACGGGTT

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MTIADRLAAIRADLPAGVTLVAVSKTQPPEAIREAYAAGQRDFGENYAQEWRAKADALADLPGLRWHFIGGLQTNKAKYL
AGRVALVHAVDREELAAELSRRFGQKGATARVLLEVNVGGEASKEGCPPDRVEALAAAVRALPSIELAGLMCIPPPEDDP
RPHFRALRALRDRLGLRELSMGMSADWRIAVEEGATLVRVGSAIFGARPPHGARGGAGPATAS

Sequences:

>Translated_223_residues
MTIADRLAAIRADLPAGVTLVAVSKTQPPEAIREAYAAGQRDFGENYAQEWRAKADALADLPGLRWHFIGGLQTNKAKYL
AGRVALVHAVDREELAAELSRRFGQKGATARVLLEVNVGGEASKEGCPPDRVEALAAAVRALPSIELAGLMCIPPPEDDP
RPHFRALRALRDRLGLRELSMGMSADWRIAVEEGATLVRVGSAIFGARPPHGARGGAGPATAS
>Mature_222_residues
TIADRLAAIRADLPAGVTLVAVSKTQPPEAIREAYAAGQRDFGENYAQEWRAKADALADLPGLRWHFIGGLQTNKAKYLA
GRVALVHAVDREELAAELSRRFGQKGATARVLLEVNVGGEASKEGCPPDRVEALAAAVRALPSIELAGLMCIPPPEDDPR
PHFRALRALRDRLGLRELSMGMSADWRIAVEEGATLVRVGSAIFGARPPHGARGGAGPATAS

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=217, Percent_Identity=41.9354838709677, Blast_Score=145, Evalue=3e-35,
Organism=Escherichia coli, GI1789321, Length=226, Percent_Identity=40.7079646017699, Blast_Score=146, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17533025, Length=208, Percent_Identity=37.5, Blast_Score=118, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6319435, Length=216, Percent_Identity=34.7222222222222, Blast_Score=105, Evalue=7e-24,
Organism=Drosophila melanogaster, GI45550861, Length=211, Percent_Identity=38.8625592417062, Blast_Score=135, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 23684; Mature: 23553

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIADRLAAIRADLPAGVTLVAVSKTQPPEAIREAYAAGQRDFGENYAQEWRAKADALAD
CCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LPGLRWHFIGGLQTNKAKYLAGRVALVHAVDREELAAELSRRFGQKGATARVLLEVNVGG
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCEEEEEEEECCC
EASKEGCPPDRVEALAAAVRALPSIELAGLMCIPPPEDDPRPHFRALRALRDRLGLRELS
CCCCCCCCHHHHHHHHHHHHHCCCCHHCCEEECCCCCCCCCHHHHHHHHHHHHHCHHHHH
MGMSADWRIAVEEGATLVRVGSAIFGARPPHGARGGAGPATAS
CCCCCCEEEECCCCCEEEEECHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TIADRLAAIRADLPAGVTLVAVSKTQPPEAIREAYAAGQRDFGENYAQEWRAKADALAD
CHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LPGLRWHFIGGLQTNKAKYLAGRVALVHAVDREELAAELSRRFGQKGATARVLLEVNVGG
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCEEEEEEEECCC
EASKEGCPPDRVEALAAAVRALPSIELAGLMCIPPPEDDPRPHFRALRALRDRLGLRELS
CCCCCCCCHHHHHHHHHHHHHCCCCHHCCEEECCCCCCCCCHHHHHHHHHHHHHCHHHHH
MGMSADWRIAVEEGATLVRVGSAIFGARPPHGARGGAGPATAS
CCCCCCEEEECCCCCEEEEECHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]