Click here to switch to the map view.

The map label for this gene is yqhH [H]

Identifier: 220916532

GI number: 220916532

Start: 1595595

End: 1598342

Strand: Reverse

Name: yqhH [H]

Synonym: A2cp1_1426

Alternate gene names: 220916532

Gene position: 1598342-1595595 (Counterclockwise)

Preceding gene: 220916533

Following gene: 220916529

Centisome position: 31.78

GC content: 73.84

Gene sequence:

>2748_bases
ATGGGCGGGGTGTCTCAGGTTGCGTCGCGCGCGGGCTCGGCCCGGCCGCAGCTGACGCGGTTCCACCAGCGGGTTGCGGC
GGAGGCGCTGACCGCGCGCGGCGGGGGCGGCACGTCCCGGCTCGCGCCCGCGCTGGCCCACTCCGCGGTGGACCTGAACC
CCCACCAGATCGAGGCGGCCGCGTTCGCGCTGGCGGCGCTCCCCACCGGCGGCGCGGTGCTGGCCGACGAGGTCGGCCTG
GGGAAGACCGTCGAGGCGGGCCTGGTGCTGGCGCAGCTCGCCGCCGAGGGGAAGCCGCGCGCCGTCATCCTGGTGCCGGC
CTCGCTGCGCGCGCAGTGGCGGGAGGAGCTGCGCTCGAAGTTCGGCCTCGAGGCGGACGTGGTGGACGGCGACACCTGCC
GCGAGCGCGAGCGCCAGGGGCTGAAGACGAACCCGTTCGACACCGGCGGGATCGTGATCTGCTCGCACCCGTTCGCCGCG
CTGCGCGTCGCCGAGGTGGAGCGCGTCCACTGGGACGTGGCGGTCATCGACGAGGCGCACCGGCTCCGCAACGCCTACCG
CAAGGACCACCGCACCGGCCAGGCGCTGCGCCGGGCGCTGCGGCGCTCACCGAAGCTCCTGCTCACCGCCACCCCGCTGC
AGAACGACCTGATGGAGCTGCTCGGGCTGGCCGCGTTCATCGACGACGCGCTGCTCGGCAACGAGGAGACGTTCCGGCTC
CAGTACGCGTCCGGCGAGCTCACCGAGGACAAGGCCGCCGACCTGAAGGCGCGGCTGGCGCCGGTGGTGGTGCGCACCCT
CCGCCGGCAGGTGAAGGAGTACGTCAAGTACACGGCCCGCCGCTCCATCGTGGAGGACTTCGCCCCCACCGCGCAGGAGC
AGGAGCTGTACGACCGCGTCTCCGAGTACCTGCGGCGCGAGGACGCCTACGCCATCCCCATGGCCCGGCGCGCGCTGTTC
GTGCTGGTGTACCGCAAGATCCTGGCGTCCTCGTCGTTCGCGCTCGCGGCCACGCTGGACCGCCTCGCCGACACGCTCGA
CCAGAAGATCGCCGGGGTCGAGTGCACCGCCCAGGCCGACCTCCTGCTGGAGATGGACGGGTTCGCCGAGGAGGTGGAGG
AGCTCTTCGACGACGAGGGCGCGCCCCAGAAGCCGAAGGGCCAGCTCGCGCTCCGGCGCATGAACGACGAGCTCACCGAG
CTGCGCGCCTGCGCCAGGCTGGCGCGCGAGATCAAGGTGAACGCGAAGGGCGACGCGCTGGTGCGCGGGCTCGACCGCTG
CTTCACCGTCGCGAAGGCGTGCGGGTGGCCGGAGAAGGCGGTGGTGTTCACCGAGTTCCGGCGCACGCAGGACTACCTCC
GGCGGCTGCTCGAGTCGAAGGGCTACAGCGTCACCTGCCTCTCCGGCGACGTGGGCGGCACCGAGAAGCGCGCCGCGCTG
GTGGAGGAGTTCCGCGACCGCACCCAGATCCTGCTGATGACCGAGGCCGGCGCCGAGGGGCTGAACCTCCAGTTCTGCAA
CCTGGTGGTCAACTACGACCTGCCCTGGAACCCGCAGCGCGTGGAGCAGCGCATCGGCCGCTGCCACCGCTACGGCCAGC
AGCGCGACGTGCTGGTGCTGAACTTCCTGAACCGGTCCAACGCCGCCGACGCCCGCCTGTTCGACCTGCTCTCGCAGAAG
CTGGCGCTGTTCGACGGCGTGTTCGGCTCGTCGGACGAGATCCTGGGCGCGCTCGGCACCGGCATCGACTTCGAGAAGCG
GGTGCTGGACATCTACCAGGCCTGCCGCTCCGGCGAGGAGATCGACCGCGCCTTCTCGAAGCTGCGCGGCGAGCTGGACG
ACCGGATCTCGGCCCGCTTCGCGGCGGCCCGCGCGCTCCTGTTCGAGCGGTTCGACGGCGAGGTGCGCGGCCGGCTGCGG
GTGGCGGAGAAGAACGCGAAGGAGGCGGTGGCCCGGCGCGAGGCCGACGAGGAGGCGCTGGTCGCGGCCGCGTTCGAGGA
GGAGGCGGCGGCGCCGCCGGAGGAGCCGGCCCGCGGCCGCACCCGCCGCGCGAAGCTGATCCAGGCCGCGGCGGAGCGGA
TCCGCGCCCGGCCGCAGGACGCGGTCTCGTTCCTGGAGCTCCCCAACCGCCTCCTGCCGGCCTCGCTGGGCAAGCTGGCC
GGGCGCGAGGGCTGGTGGTTCGCCTACAAGTACGCGTTCGACGCGCTCGTCTCGGAGGAGCGCGTGGTGCACCTGGTCCT
CTGGTTCGACGGGGAGCGGTTCCACGCGCTCTCCCCGGAGGACGCCGACGCGTTCGCGGCGCTCCCGGCGGAGGAGACGC
AGGCCGGACCGCGCGGCGCCACGGTGTCGATCGGCGAGGCCCAGGAGCAGGCGCTGGAGGCGTTCCACGCGGCGCTGGTC
GCCGACCTGCAGGAGCGGATCGGCGCCGCCTACGACGCCTCGCGCGACCGCTGGGACCGGGCGGTGGAGGACGCGCTCGC
CTCGCCGCGGAAGGCGGCCGAGGACGCGCGCGCCGCCTGGGGTCGGGCGCGCGCCGCGCTGGGCGACCGCTCCGACCTGC
CGCTGCGGGATCGACGGGCGCTGCTGGAGCGCGCCGAGCGCGAGTACCGGCGCAAGCTCGACGACCTGCGCGCCGTCGAG
GCGCAGCGCTACGCCGAGAAGGACCGCGCCATCGCCGACCTCAAGAAGCGCTCCGAGGTGAAGGAGCGCCGGACGCTGGT
CGCGACCGCGTACTGGCGCTGCGTCTGA

Upstream 100 bases:

>100_bases
CTCCGGTATCGCGGGATACCGGGCGGCGCCGCGGGAACCTCCGCGCGCGCTGCGGCGTGGGCGGGCGCGTGGGCGCCCCG
GGGTGGCGGAGGCGGTGCGG

Downstream 100 bases:

>100_bases
GCCGTCAGCGCGTCGCCGGCGCCGACCCGGTGCCGGCCGCGGCGGTTGCCGGCGCGACCAGCTCGAAGCGGATGGGCACC
GCCACCCGGCCGCCGCCGGG

Product: helicase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 915; Mature: 914

Protein sequence:

>915_residues
MGGVSQVASRAGSARPQLTRFHQRVAAEALTARGGGGTSRLAPALAHSAVDLNPHQIEAAAFALAALPTGGAVLADEVGL
GKTVEAGLVLAQLAAEGKPRAVILVPASLRAQWREELRSKFGLEADVVDGDTCRERERQGLKTNPFDTGGIVICSHPFAA
LRVAEVERVHWDVAVIDEAHRLRNAYRKDHRTGQALRRALRRSPKLLLTATPLQNDLMELLGLAAFIDDALLGNEETFRL
QYASGELTEDKAADLKARLAPVVVRTLRRQVKEYVKYTARRSIVEDFAPTAQEQELYDRVSEYLRREDAYAIPMARRALF
VLVYRKILASSSFALAATLDRLADTLDQKIAGVECTAQADLLLEMDGFAEEVEELFDDEGAPQKPKGQLALRRMNDELTE
LRACARLAREIKVNAKGDALVRGLDRCFTVAKACGWPEKAVVFTEFRRTQDYLRRLLESKGYSVTCLSGDVGGTEKRAAL
VEEFRDRTQILLMTEAGAEGLNLQFCNLVVNYDLPWNPQRVEQRIGRCHRYGQQRDVLVLNFLNRSNAADARLFDLLSQK
LALFDGVFGSSDEILGALGTGIDFEKRVLDIYQACRSGEEIDRAFSKLRGELDDRISARFAAARALLFERFDGEVRGRLR
VAEKNAKEAVARREADEEALVAAAFEEEAAAPPEEPARGRTRRAKLIQAAAERIRARPQDAVSFLELPNRLLPASLGKLA
GREGWWFAYKYAFDALVSEERVVHLVLWFDGERFHALSPEDADAFAALPAEETQAGPRGATVSIGEAQEQALEAFHAALV
ADLQERIGAAYDASRDRWDRAVEDALASPRKAAEDARAAWGRARAALGDRSDLPLRDRRALLERAEREYRRKLDDLRAVE
AQRYAEKDRAIADLKKRSEVKERRTLVATAYWRCV

Sequences:

>Translated_915_residues
MGGVSQVASRAGSARPQLTRFHQRVAAEALTARGGGGTSRLAPALAHSAVDLNPHQIEAAAFALAALPTGGAVLADEVGL
GKTVEAGLVLAQLAAEGKPRAVILVPASLRAQWREELRSKFGLEADVVDGDTCRERERQGLKTNPFDTGGIVICSHPFAA
LRVAEVERVHWDVAVIDEAHRLRNAYRKDHRTGQALRRALRRSPKLLLTATPLQNDLMELLGLAAFIDDALLGNEETFRL
QYASGELTEDKAADLKARLAPVVVRTLRRQVKEYVKYTARRSIVEDFAPTAQEQELYDRVSEYLRREDAYAIPMARRALF
VLVYRKILASSSFALAATLDRLADTLDQKIAGVECTAQADLLLEMDGFAEEVEELFDDEGAPQKPKGQLALRRMNDELTE
LRACARLAREIKVNAKGDALVRGLDRCFTVAKACGWPEKAVVFTEFRRTQDYLRRLLESKGYSVTCLSGDVGGTEKRAAL
VEEFRDRTQILLMTEAGAEGLNLQFCNLVVNYDLPWNPQRVEQRIGRCHRYGQQRDVLVLNFLNRSNAADARLFDLLSQK
LALFDGVFGSSDEILGALGTGIDFEKRVLDIYQACRSGEEIDRAFSKLRGELDDRISARFAAARALLFERFDGEVRGRLR
VAEKNAKEAVARREADEEALVAAAFEEEAAAPPEEPARGRTRRAKLIQAAAERIRARPQDAVSFLELPNRLLPASLGKLA
GREGWWFAYKYAFDALVSEERVVHLVLWFDGERFHALSPEDADAFAALPAEETQAGPRGATVSIGEAQEQALEAFHAALV
ADLQERIGAAYDASRDRWDRAVEDALASPRKAAEDARAAWGRARAALGDRSDLPLRDRRALLERAEREYRRKLDDLRAVE
AQRYAEKDRAIADLKKRSEVKERRTLVATAYWRCV
>Mature_914_residues
GGVSQVASRAGSARPQLTRFHQRVAAEALTARGGGGTSRLAPALAHSAVDLNPHQIEAAAFALAALPTGGAVLADEVGLG
KTVEAGLVLAQLAAEGKPRAVILVPASLRAQWREELRSKFGLEADVVDGDTCRERERQGLKTNPFDTGGIVICSHPFAAL
RVAEVERVHWDVAVIDEAHRLRNAYRKDHRTGQALRRALRRSPKLLLTATPLQNDLMELLGLAAFIDDALLGNEETFRLQ
YASGELTEDKAADLKARLAPVVVRTLRRQVKEYVKYTARRSIVEDFAPTAQEQELYDRVSEYLRREDAYAIPMARRALFV
LVYRKILASSSFALAATLDRLADTLDQKIAGVECTAQADLLLEMDGFAEEVEELFDDEGAPQKPKGQLALRRMNDELTEL
RACARLAREIKVNAKGDALVRGLDRCFTVAKACGWPEKAVVFTEFRRTQDYLRRLLESKGYSVTCLSGDVGGTEKRAALV
EEFRDRTQILLMTEAGAEGLNLQFCNLVVNYDLPWNPQRVEQRIGRCHRYGQQRDVLVLNFLNRSNAADARLFDLLSQKL
ALFDGVFGSSDEILGALGTGIDFEKRVLDIYQACRSGEEIDRAFSKLRGELDDRISARFAAARALLFERFDGEVRGRLRV
AEKNAKEAVARREADEEALVAAAFEEEAAAPPEEPARGRTRRAKLIQAAAERIRARPQDAVSFLELPNRLLPASLGKLAG
REGWWFAYKYAFDALVSEERVVHLVLWFDGERFHALSPEDADAFAALPAEETQAGPRGATVSIGEAQEQALEAFHAALVA
DLQERIGAAYDASRDRWDRAVEDALASPRKAAEDARAAWGRARAALGDRSDLPLRDRRALLERAEREYRRKLDDLRAVEA
QRYAEKDRAIADLKKRSEVKERRTLVATAYWRCV

Specific function: Transcription Regulator That Activates Transcription By Stimulating RNA Polymerase (Rnap) Recycling In Case Of Stress Conditions Such As Supercoiled DNA Or High Salt Concentrations. Probably Acts By Releasing The Rnap, When It Is Trapped Or Immobilized On

COG id: COG0553

COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI29244924, Length=519, Percent_Identity=26.3969171483622, Blast_Score=137, Evalue=4e-32,
Organism=Homo sapiens, GI54112403, Length=519, Percent_Identity=26.9749518304432, Blast_Score=125, Evalue=2e-28,
Organism=Homo sapiens, GI114326455, Length=549, Percent_Identity=26.2295081967213, Blast_Score=124, Evalue=4e-28,
Organism=Homo sapiens, GI282165704, Length=549, Percent_Identity=26.2295081967213, Blast_Score=124, Evalue=4e-28,
Organism=Homo sapiens, GI148612870, Length=580, Percent_Identity=24.4827586206897, Blast_Score=115, Evalue=3e-25,
Organism=Homo sapiens, GI95147342, Length=519, Percent_Identity=26.3969171483622, Blast_Score=114, Evalue=5e-25,
Organism=Homo sapiens, GI6912622, Length=528, Percent_Identity=24.6212121212121, Blast_Score=112, Evalue=2e-24,
Organism=Homo sapiens, GI52630322, Length=522, Percent_Identity=24.7126436781609, Blast_Score=111, Evalue=3e-24,
Organism=Homo sapiens, GI52630326, Length=522, Percent_Identity=24.7126436781609, Blast_Score=111, Evalue=3e-24,
Organism=Homo sapiens, GI158420731, Length=522, Percent_Identity=24.7126436781609, Blast_Score=111, Evalue=4e-24,
Organism=Homo sapiens, GI21914927, Length=584, Percent_Identity=24.1438356164384, Blast_Score=108, Evalue=2e-23,
Organism=Homo sapiens, GI216548193, Length=293, Percent_Identity=25.938566552901, Blast_Score=89, Evalue=2e-17,
Organism=Homo sapiens, GI216548186, Length=293, Percent_Identity=25.938566552901, Blast_Score=89, Evalue=2e-17,
Organism=Homo sapiens, GI51599156, Length=250, Percent_Identity=28.4, Blast_Score=85, Evalue=3e-16,
Organism=Homo sapiens, GI58331268, Length=202, Percent_Identity=29.7029702970297, Blast_Score=81, Evalue=4e-15,
Organism=Homo sapiens, GI4557565, Length=287, Percent_Identity=24.0418118466899, Blast_Score=76, Evalue=1e-13,
Organism=Homo sapiens, GI164419749, Length=230, Percent_Identity=26.9565217391304, Blast_Score=74, Evalue=8e-13,
Organism=Homo sapiens, GI21071044, Length=230, Percent_Identity=26.9565217391304, Blast_Score=74, Evalue=8e-13,
Organism=Homo sapiens, GI146219843, Length=189, Percent_Identity=32.2751322751323, Blast_Score=70, Evalue=1e-11,
Organism=Escherichia coli, GI1786245, Length=168, Percent_Identity=39.8809523809524, Blast_Score=95, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17569817, Length=556, Percent_Identity=23.5611510791367, Blast_Score=111, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17539642, Length=538, Percent_Identity=23.2342007434944, Blast_Score=104, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71995707, Length=516, Percent_Identity=24.4186046511628, Blast_Score=97, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI32563629, Length=517, Percent_Identity=24.5647969052224, Blast_Score=97, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17508659, Length=217, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI193203140, Length=215, Percent_Identity=31.6279069767442, Blast_Score=78, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI25144179, Length=212, Percent_Identity=29.7169811320755, Blast_Score=77, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71991518, Length=265, Percent_Identity=25.6603773584906, Blast_Score=77, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17551114, Length=248, Percent_Identity=23.3870967741935, Blast_Score=75, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71987143, Length=198, Percent_Identity=29.2929292929293, Blast_Score=75, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562600, Length=247, Percent_Identity=29.1497975708502, Blast_Score=75, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115534248, Length=218, Percent_Identity=28.4403669724771, Blast_Score=74, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71988744, Length=143, Percent_Identity=32.1678321678322, Blast_Score=69, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6321153, Length=535, Percent_Identity=25.4205607476636, Blast_Score=119, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6321012, Length=494, Percent_Identity=24.8987854251012, Blast_Score=110, Evalue=7e-25,
Organism=Saccharomyces cerevisiae, GI6319300, Length=536, Percent_Identity=24.8134328358209, Blast_Score=101, Evalue=6e-22,
Organism=Saccharomyces cerevisiae, GI6324864, Length=515, Percent_Identity=24.8543689320388, Blast_Score=100, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6319722, Length=241, Percent_Identity=29.4605809128631, Blast_Score=85, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6324879, Length=242, Percent_Identity=26.8595041322314, Blast_Score=77, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6321289, Length=221, Percent_Identity=27.1493212669683, Blast_Score=75, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6320541, Length=171, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6322065, Length=172, Percent_Identity=26.7441860465116, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6325175, Length=235, Percent_Identity=25.1063829787234, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24666729, Length=549, Percent_Identity=24.2258652094718, Blast_Score=130, Evalue=4e-30,
Organism=Drosophila melanogaster, GI281361889, Length=541, Percent_Identity=24.5841035120148, Blast_Score=114, Evalue=5e-25,
Organism=Drosophila melanogaster, GI17136368, Length=545, Percent_Identity=25.1376146788991, Blast_Score=103, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24664914, Length=508, Percent_Identity=24.2125984251968, Blast_Score=100, Evalue=4e-21,
Organism=Drosophila melanogaster, GI17985967, Length=508, Percent_Identity=24.2125984251968, Blast_Score=100, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24664907, Length=508, Percent_Identity=24.2125984251968, Blast_Score=100, Evalue=5e-21,
Organism=Drosophila melanogaster, GI28574896, Length=508, Percent_Identity=24.2125984251968, Blast_Score=100, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24583161, Length=566, Percent_Identity=22.791519434629, Blast_Score=94, Evalue=6e-19,
Organism=Drosophila melanogaster, GI281366478, Length=247, Percent_Identity=29.9595141700405, Blast_Score=85, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24667055, Length=247, Percent_Identity=29.9595141700405, Blast_Score=85, Evalue=3e-16,
Organism=Drosophila melanogaster, GI62472261, Length=247, Percent_Identity=29.9595141700405, Blast_Score=85, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24653134, Length=244, Percent_Identity=28.6885245901639, Blast_Score=80, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24653132, Length=244, Percent_Identity=28.6885245901639, Blast_Score=80, Evalue=4e-15,
Organism=Drosophila melanogaster, GI17737463, Length=244, Percent_Identity=28.6885245901639, Blast_Score=80, Evalue=4e-15,
Organism=Drosophila melanogaster, GI17986031, Length=235, Percent_Identity=27.2340425531915, Blast_Score=76, Evalue=1e-13,
Organism=Drosophila melanogaster, GI221330583, Length=235, Percent_Identity=27.2340425531915, Blast_Score=75, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28573600, Length=258, Percent_Identity=29.0697674418605, Blast_Score=75, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24644932, Length=135, Percent_Identity=34.0740740740741, Blast_Score=74, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24656962, Length=257, Percent_Identity=28.4046692607004, Blast_Score=70, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24656966, Length=257, Percent_Identity=28.4046692607004, Blast_Score=70, Evalue=5e-12,
Organism=Drosophila melanogaster, GI85724912, Length=303, Percent_Identity=24.0924092409241, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI85724914, Length=324, Percent_Identity=23.7654320987654, Blast_Score=69, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000330 [H]

Pfam domain/function: PF00271 Helicase_C; PF00176 SNF2_N [H]

EC number: 3.6.1.- [C]

Molecular weight: Translated: 101690; Mature: 101559

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGVSQVASRAGSARPQLTRFHQRVAAEALTARGGGGTSRLAPALAHSAVDLNPHQIEAA
CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
AFALAALPTGGAVLADEVGLGKTVEAGLVLAQLAAEGKPRAVILVPASLRAQWREELRSK
HHHHHHCCCCCCEEHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHH
FGLEADVVDGDTCRERERQGLKTNPFDTGGIVICSHPFAALRVAEVERVHWDVAVIDEAH
HCCCEECCCCHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
RLRNAYRKDHRTGQALRRALRRSPKLLLTATPLQNDLMELLGLAAFIDDALLGNEETFRL
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEE
QYASGELTEDKAADLKARLAPVVVRTLRRQVKEYVKYTARRSIVEDFAPTAQEQELYDRV
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
SEYLRREDAYAIPMARRALFVLVYRKILASSSFALAATLDRLADTLDQKIAGVECTAQAD
HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCC
LLLEMDGFAEEVEELFDDEGAPQKPKGQLALRRMNDELTELRACARLAREIKVNAKGDAL
EEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
VRGLDRCFTVAKACGWPEKAVVFTEFRRTQDYLRRLLESKGYSVTCLSGDVGGTEKRAAL
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
VEEFRDRTQILLMTEAGAEGLNLQFCNLVVNYDLPWNPQRVEQRIGRCHRYGQQRDVLVL
HHHHHCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEE
NFLNRSNAADARLFDLLSQKLALFDGVFGSSDEILGALGTGIDFEKRVLDIYQACRSGEE
EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCHH
IDRAFSKLRGELDDRISARFAAARALLFERFDGEVRGRLRVAEKNAKEAVARREADEEAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEHHHHHHHHHHHHCCCHHHH
VAAAFEEEAAAPPEEPARGRTRRAKLIQAAAERIRARPQDAVSFLELPNRLLPASLGKLA
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHC
GREGWWFAYKYAFDALVSEERVVHLVLWFDGERFHALSPEDADAFAALPAEETQAGPRGA
CCCCCEEHHHHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCCHHEECCCHHHCCCCCCC
TVSIGEAQEQALEAFHAALVADLQERIGAAYDASRDRWDRAVEDALASPRKAAEDARAAW
EEECCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
GRARAALGDRSDLPLRDRRALLERAEREYRRKLDDLRAVEAQRYAEKDRAIADLKKRSEV
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KERRTLVATAYWRCV
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
GGVSQVASRAGSARPQLTRFHQRVAAEALTARGGGGTSRLAPALAHSAVDLNPHQIEAA
CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
AFALAALPTGGAVLADEVGLGKTVEAGLVLAQLAAEGKPRAVILVPASLRAQWREELRSK
HHHHHHCCCCCCEEHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHH
FGLEADVVDGDTCRERERQGLKTNPFDTGGIVICSHPFAALRVAEVERVHWDVAVIDEAH
HCCCEECCCCHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
RLRNAYRKDHRTGQALRRALRRSPKLLLTATPLQNDLMELLGLAAFIDDALLGNEETFRL
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEE
QYASGELTEDKAADLKARLAPVVVRTLRRQVKEYVKYTARRSIVEDFAPTAQEQELYDRV
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
SEYLRREDAYAIPMARRALFVLVYRKILASSSFALAATLDRLADTLDQKIAGVECTAQAD
HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCC
LLLEMDGFAEEVEELFDDEGAPQKPKGQLALRRMNDELTELRACARLAREIKVNAKGDAL
EEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
VRGLDRCFTVAKACGWPEKAVVFTEFRRTQDYLRRLLESKGYSVTCLSGDVGGTEKRAAL
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
VEEFRDRTQILLMTEAGAEGLNLQFCNLVVNYDLPWNPQRVEQRIGRCHRYGQQRDVLVL
HHHHHCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEE
NFLNRSNAADARLFDLLSQKLALFDGVFGSSDEILGALGTGIDFEKRVLDIYQACRSGEE
EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCHH
IDRAFSKLRGELDDRISARFAAARALLFERFDGEVRGRLRVAEKNAKEAVARREADEEAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEHHHHHHHHHHHHCCCHHHH
VAAAFEEEAAAPPEEPARGRTRRAKLIQAAAERIRARPQDAVSFLELPNRLLPASLGKLA
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHC
GREGWWFAYKYAFDALVSEERVVHLVLWFDGERFHALSPEDADAFAALPAEETQAGPRGA
CCCCCEEHHHHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCCHHEECCCHHHCCCCCCC
TVSIGEAQEQALEAFHAALVADLQERIGAAYDASRDRWDRAVEDALASPRKAAEDARAAW
EEECCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
GRARAALGDRSDLPLRDRRALLERAEREYRRKLDDLRAVEAQRYAEKDRAIADLKKRSEV
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KERRTLVATAYWRCV
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]