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The map label for this gene is clpX [H]

Identifier: 220916470

GI number: 220916470

Start: 1528028

End: 1529131

Strand: Reverse

Name: clpX [H]

Synonym: A2cp1_1364

Alternate gene names: 220916470

Gene position: 1529131-1528028 (Counterclockwise)

Preceding gene: 220916471

Following gene: 220916466

Centisome position: 30.4

GC content: 76.09

Gene sequence:

>1104_bases
GTGAAGCCGCCGCTGCGCCTCGACGAGCCGCTCCCCATCCTCACCCCCCGCGAGATCCACGCGAGCCTGTCGCGCTGGGT
GATCGGCCAGGAGCCCGCGAAGCGGGCGCTGGCGATCGCCGCCTACAGCCACCTGAAGCGCGTGGCGATGCGCCGCGCGA
GCCGCGAGGTGGCGGTGCAGAAGTCGAACGTGCTGCTCGTCGGCCCGACCGGCTGCGGCAAGACCCACCTCGCGCGCCAC
CTGGCCCGCGTGCTCGAGGTGCCGTTCCACGTCGCCGACGCGACCGAGTTCACCGAGGCCGGTTACTACGGCAAGGACGT
GGAGACCATGATCGGCGAGCTGCTGCTGCGCGCGAGCCACTCCATCGAGGACGCGCAGCGCGGCATCGTGTTCGTGGACG
AGGTGGACAAGATCGCGCGCCGCTCGCAGCCGGCCCGCGGCGGCGCGGGGCAGCGCGACATCGGCGGCGAGGGCGTGCAG
CAGGCGCTCCTGAAGCTGCTGGAGGGGCGCGAGGTGCACGTGCCGCTCGGGCTGGGCGGGCCGCAGTGGGCGCGCCGCGA
CACCGTGCCGGTGGACACCACCGACATCCTGTTCGTCTGCGCCGGCACGTTCTCCGACCTGTTCGCGTACGCGGGCGACG
GCCGGTCGCTCGGCTTCGGCGCGCGGCCAGGCGCGGCGGCGGCGCGGCGGCGGATCCGGCCGCGCGACCTGGTCGAGTAC
GGGATGCTGGCCGAGTTCCTGGGCCGGCTCCCGGTGATGGTGCAGCTCGACGAGCTCGGGCCCGAGGCGCTGCTGGAGGT
GCTCACCGGCCCGCCGGACGCGGTGCTCCGCCAGATGCGCGCCCTGCTCGCGGCGGACGGCGTGGAGCTGGACGTCACCG
ACGGCGCGCTGCACGAGCTGGTCGCGTTCGCGCGCGAGCGCGGCGCGGGCGCGCGCGGGCTCCGCGCCGTGGTCGAGGAG
GTGCTGGCGGAGCTGCTGTTCGAGGCCCCGGAGCGGAGCGGCACCCGCGTGCTGCTGGACGCCGGCTGGGTGCGCGCGCG
GCTCGAGGCGATCGGGCCGGGGATCGCCGGGGCGGAGGGGCCGGAGCGCCTCGCCGGCGCGTGA

Upstream 100 bases:

>100_bases
CTGATCGGCTGGGCGCTGGCCGGGCGCTGAGCGGCGCCGCGTCCCGGCGCGCGCCCGGCACGTCGTTGCCGCGGCGCCGT
CCGGCCATACCGTTCAGGGT

Downstream 100 bases:

>100_bases
GCCGCGGCCGCTCAGCGGTGGAGCGCCCGCTCGAGCGCGCGCGCCTGCTCCGGATCGAGCCGCTCCAGCAGGTCGTGCGA
TCGCACCAGCGCCGCGAAGT

Product: ATP-dependent protease ATP-binding subunit ClpX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MKPPLRLDEPLPILTPREIHASLSRWVIGQEPAKRALAIAAYSHLKRVAMRRASREVAVQKSNVLLVGPTGCGKTHLARH
LARVLEVPFHVADATEFTEAGYYGKDVETMIGELLLRASHSIEDAQRGIVFVDEVDKIARRSQPARGGAGQRDIGGEGVQ
QALLKLLEGREVHVPLGLGGPQWARRDTVPVDTTDILFVCAGTFSDLFAYAGDGRSLGFGARPGAAAARRRIRPRDLVEY
GMLAEFLGRLPVMVQLDELGPEALLEVLTGPPDAVLRQMRALLAADGVELDVTDGALHELVAFARERGAGARGLRAVVEE
VLAELLFEAPERSGTRVLLDAGWVRARLEAIGPGIAGAEGPERLAGA

Sequences:

>Translated_367_residues
MKPPLRLDEPLPILTPREIHASLSRWVIGQEPAKRALAIAAYSHLKRVAMRRASREVAVQKSNVLLVGPTGCGKTHLARH
LARVLEVPFHVADATEFTEAGYYGKDVETMIGELLLRASHSIEDAQRGIVFVDEVDKIARRSQPARGGAGQRDIGGEGVQ
QALLKLLEGREVHVPLGLGGPQWARRDTVPVDTTDILFVCAGTFSDLFAYAGDGRSLGFGARPGAAAARRRIRPRDLVEY
GMLAEFLGRLPVMVQLDELGPEALLEVLTGPPDAVLRQMRALLAADGVELDVTDGALHELVAFARERGAGARGLRAVVEE
VLAELLFEAPERSGTRVLLDAGWVRARLEAIGPGIAGAEGPERLAGA
>Mature_367_residues
MKPPLRLDEPLPILTPREIHASLSRWVIGQEPAKRALAIAAYSHLKRVAMRRASREVAVQKSNVLLVGPTGCGKTHLARH
LARVLEVPFHVADATEFTEAGYYGKDVETMIGELLLRASHSIEDAQRGIVFVDEVDKIARRSQPARGGAGQRDIGGEGVQ
QALLKLLEGREVHVPLGLGGPQWARRDTVPVDTTDILFVCAGTFSDLFAYAGDGRSLGFGARPGAAAARRRIRPRDLVEY
GMLAEFLGRLPVMVQLDELGPEALLEVLTGPPDAVLRQMRALLAADGVELDVTDGALHELVAFARERGAGARGLRAVVEE
VLAELLFEAPERSGTRVLLDAGWVRARLEAIGPGIAGAEGPERLAGA

Specific function: ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP [H]

COG id: COG1219

COG function: function code O; ATP-dependent protease Clp, ATPase subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpX chaperone family [H]

Homologues:

Organism=Homo sapiens, GI7242140, Length=325, Percent_Identity=43.0769230769231, Blast_Score=238, Evalue=9e-63,
Organism=Escherichia coli, GI1786642, Length=353, Percent_Identity=43.342776203966, Blast_Score=276, Evalue=2e-75,
Organism=Escherichia coli, GI1790366, Length=231, Percent_Identity=29.8701298701299, Blast_Score=96, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71982908, Length=301, Percent_Identity=41.1960132890365, Blast_Score=215, Evalue=3e-56,
Organism=Caenorhabditis elegans, GI71982905, Length=301, Percent_Identity=41.1960132890365, Blast_Score=214, Evalue=5e-56,
Organism=Caenorhabditis elegans, GI71988663, Length=400, Percent_Identity=34, Blast_Score=201, Evalue=4e-52,
Organism=Caenorhabditis elegans, GI71988660, Length=250, Percent_Identity=38.4, Blast_Score=158, Evalue=5e-39,
Organism=Saccharomyces cerevisiae, GI6319704, Length=432, Percent_Identity=29.8611111111111, Blast_Score=193, Evalue=5e-50,
Organism=Drosophila melanogaster, GI24648291, Length=321, Percent_Identity=40.809968847352, Blast_Score=229, Evalue=2e-60,
Organism=Drosophila melanogaster, GI24648289, Length=321, Percent_Identity=40.809968847352, Blast_Score=229, Evalue=3e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR019489
- InterPro:   IPR004487
- InterPro:   IPR010603 [H]

Pfam domain/function: PF07724 AAA_2; PF10431 ClpB_D2-small; PF06689 zf-C4_ClpX [H]

EC number: NA

Molecular weight: Translated: 39481; Mature: 39481

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPPLRLDEPLPILTPREIHASLSRWVIGQEPAKRALAIAAYSHLKRVAMRRASREVAVQ
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
KSNVLLVGPTGCGKTHLARHLARVLEVPFHVADATEFTEAGYYGKDVETMIGELLLRASH
ECCEEEECCCCCCHHHHHHHHHHHHHCCHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHC
SIEDAQRGIVFVDEVDKIARRSQPARGGAGQRDIGGEGVQQALLKLLEGREVHVPLGLGG
CHHHHHCCEEEEHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
PQWARRDTVPVDTTDILFVCAGTFSDLFAYAGDGRSLGFGARPGAAAARRRIRPRDLVEY
CCCCCCCCCCCCCHHHHEEHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCHHHHHHH
GMLAEFLGRLPVMVQLDELGPEALLEVLTGPPDAVLRQMRALLAADGVELDVTDGALHEL
HHHHHHHCCCCEEEEEHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECCCHHHHHH
VAFARERGAGARGLRAVVEEVLAELLFEAPERSGTRVLLDAGWVRARLEAIGPGIAGAEG
HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCC
PERLAGA
CHHHCCC
>Mature Secondary Structure
MKPPLRLDEPLPILTPREIHASLSRWVIGQEPAKRALAIAAYSHLKRVAMRRASREVAVQ
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
KSNVLLVGPTGCGKTHLARHLARVLEVPFHVADATEFTEAGYYGKDVETMIGELLLRASH
ECCEEEECCCCCCHHHHHHHHHHHHHCCHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHC
SIEDAQRGIVFVDEVDKIARRSQPARGGAGQRDIGGEGVQQALLKLLEGREVHVPLGLGG
CHHHHHCCEEEEHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
PQWARRDTVPVDTTDILFVCAGTFSDLFAYAGDGRSLGFGARPGAAAARRRIRPRDLVEY
CCCCCCCCCCCCCHHHHEEHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCHHHHHHH
GMLAEFLGRLPVMVQLDELGPEALLEVLTGPPDAVLRQMRALLAADGVELDVTDGALHEL
HHHHHHHCCCCEEEEEHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECCCHHHHHH
VAFARERGAGARGLRAVVEEVLAELLFEAPERSGTRVLLDAGWVRARLEAIGPGIAGAEG
HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCC
PERLAGA
CHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA