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The map label for this gene is dnaQ [H]

Identifier: 220915934

GI number: 220915934

Start: 917401

End: 918024

Strand: Reverse

Name: dnaQ [H]

Synonym: A2cp1_0820

Alternate gene names: 220915934

Gene position: 918024-917401 (Counterclockwise)

Preceding gene: 220915936

Following gene: 220915929

Centisome position: 18.25

GC content: 74.04

Gene sequence:

>624_bases
ATGCTAGGAAACGACCACGTGTTCTGGCCCTCCCCTTCGTGGGACAGCGTCGTCTACTGGGCCCTCGACCTGGAAACCGG
CGGTCTGGACCCCCGCCGGGACGCGATCCTGGCCGTGGGCATGGTCCCCGTGCGCCAGGGCAGCGTCCGTCTGGGGGAGT
CGTTCTCGACCCTGATCCGGCCGGAGGCGGCGGCCGCCGCCATCGACCCGGGTTCGATCCTCGCCCACCAGCTCGTCCCG
CACGACGTGGCCACGGCGCCGTCGCTCGACTCGGTGCTGGCGGACGTGGACCTGCGGGCGCGGGAGGGTGCGCTGCTCGT
GCACCAGGCGTCGCTCGACGTGGCGTTCCTGAAGCGCGCCTACCGCCGGTGCGGCCGCCGCTGGCCGGAGCCGCCGGTGG
TGGACACGGTGGCGCTGCTCATCAAGGCCGCGAAGCGGCAGCGGTTCGTGAACCCGGACGCGCCGTCGATGGAGCCGGAC
CTGAACCTGCTCGCGGCGCGGCGGCAGCGCGGGCTGCCCGACTACGGCCAGCACGACGCGCTGACCGACGCGGTCGCCAC
CGCGGAGCTGTTCCTGGTGCTCCGGCGCCAGGTCGCCGCGCGGACCCTGCGCGACCTGCGCTGA

Upstream 100 bases:

>100_bases
CGCGATGTCCCGGCCCGGGACGGCCAGGAAGGTGTGCGAAGCTAGGGTGTGGTAGGTGACGTCGTGCAAGCGCCTACATG
CTGCCACCCGATAGCGCCTC

Downstream 100 bases:

>100_bases
CCGGGCGAGACGCCCGGGGCGGCTACAGGCCGAGGAGCCCCGCCGCCAGGAGCGCCACGGCGACGGCGGCCGTGAGCCAC
CCGGTCCAGCGGTGGTCGAG

Product: Exonuclease RNase T and DNA polymerase III

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MLGNDHVFWPSPSWDSVVYWALDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFSTLIRPEAAAAAIDPGSILAHQLVP
HDVATAPSLDSVLADVDLRAREGALLVHQASLDVAFLKRAYRRCGRRWPEPPVVDTVALLIKAAKRQRFVNPDAPSMEPD
LNLLAARRQRGLPDYGQHDALTDAVATAELFLVLRRQVAARTLRDLR

Sequences:

>Translated_207_residues
MLGNDHVFWPSPSWDSVVYWALDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFSTLIRPEAAAAAIDPGSILAHQLVP
HDVATAPSLDSVLADVDLRAREGALLVHQASLDVAFLKRAYRRCGRRWPEPPVVDTVALLIKAAKRQRFVNPDAPSMEPD
LNLLAARRQRGLPDYGQHDALTDAVATAELFLVLRRQVAARTLRDLR
>Mature_207_residues
MLGNDHVFWPSPSWDSVVYWALDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFSTLIRPEAAAAAIDPGSILAHQLVP
HDVATAPSLDSVLADVDLRAREGALLVHQASLDVAFLKRAYRRCGRRWPEPPVVDTVALLIKAAKRQRFVNPDAPSMEPD
LNLLAARRQRGLPDYGQHDALTDAVATAELFLVLRRQVAARTLRDLR

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR000014
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 22734; Mature: 22734

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGNDHVFWPSPSWDSVVYWALDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFSTLIR
CCCCCCEECCCCCCCCEEEEEEEECCCCCCCCHHHEEEECCEECCCCCCHHCCHHHHHHC
PEAAAAAIDPGSILAHQLVPHDVATAPSLDSVLADVDLRAREGALLVHQASLDVAFLKRA
CCHHHHHCCCHHHHHHHHCCCHHCCCCCHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHH
YRRCGRRWPEPPVVDTVALLIKAAKRQRFVNPDAPSMEPDLNLLAARRQRGLPDYGQHDA
HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHH
LTDAVATAELFLVLRRQVAARTLRDLR
HHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLGNDHVFWPSPSWDSVVYWALDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFSTLIR
CCCCCCEECCCCCCCCEEEEEEEECCCCCCCCHHHEEEECCEECCCCCCHHCCHHHHHHC
PEAAAAAIDPGSILAHQLVPHDVATAPSLDSVLADVDLRAREGALLVHQASLDVAFLKRA
CCHHHHHCCCHHHHHHHHCCCHHCCCCCHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHH
YRRCGRRWPEPPVVDTVALLIKAAKRQRFVNPDAPSMEPDLNLLAARRQRGLPDYGQHDA
HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHH
LTDAVATAELFLVLRRQVAARTLRDLR
HHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9256491 [H]