Click here to switch to the map view.

The map label for this gene is rarD [C]

Identifier: 220915925

GI number: 220915925

Start: 910455

End: 911360

Strand: Reverse

Name: rarD [C]

Synonym: A2cp1_0811

Alternate gene names: 220915925

Gene position: 911360-910455 (Counterclockwise)

Preceding gene: 220915929

Following gene: 220915924

Centisome position: 18.12

GC content: 74.5

Gene sequence:

>906_bases
GTGGAATCCCGGTCCCGAGGCCTCGCCTACGCGCTCGCCGCCTACCTGCTGTGGGGCGCCTTTCCCCTGTACTTCAAGGC
GCTGCACGGCGTCCCGGCCCCCGAGATCCTGGCCCACCGGGTGCTGTGGTCGGTGGTCCTGCTCGCCGGGATCGTCCTGC
TGGGCGGGCGGTCCGGCCAGCTCCGCGATGCGCTCCGGCCCGGCCGGCGCGGCGTGCTCGCCGTGACGGCGGTGCTCATC
GCGGCGAACTGGCTCATCTACATCTGGGCGGTGAACGCCGGCCGCGTGCTGGAGGCGAGCCTCGGGTACTTCGTGAACCC
GCTCGTCAACGTGCTGCTCGGCATGGCGTTCCTGCGCGAGCGCCTCTCGCGCGTGCAGGCGCTCGCGGTGGCGCTGGCCG
GCGCGGGCGTGGCGGTGCTGGTGGTGCGGCTCGGGACCGTGCCCTGGCTGCCGCTCAGCCTCGCGCTCTCGTTCGGCCTC
TACGGCCTGCTCCGCAAGCGCGCCGGCATCGATCCCATCGGCGGCCTGCTGGCCGAGACCGCGCTGCTCGCCCCGGTGGC
GCTCGCCTACCTGGTGCTGCGCGGGACCGGCGGCGAGGGCGCGTTCGGCCACGGCGCATGGCGCACCGCGCTCCTGGTGG
CGGCGGGGCCGGTCACCACCGTCCCGCTGGTCTGGTTCGCGATCGGCGTCCGGAGCCTGCGCCTCTCGACCATGGGGCTG
GTCCAGTACATCACGCCGACGATCCAGTTCCTGATGGCCGTGGCGCTGTTCCGGGAGCCGTTCACGCGCACGCACGCGAT
CGCCTTCGGGTGCATCTGGGTCTCGCTGGCGGCGTACACCTGGGACGCGCTCGCGCGCGTCCGGCGGGTGGAGGCAGCGG
CCTCCGGAGCCGCCCGGGCCGCCTGA

Upstream 100 bases:

>100_bases
GGAGGTCCGGAGGGGATCCTAACCTCGGCGCCGCCTTGCGGACAGGCCGGAGGGGGGAATCGGGTGCGCCTCGGCGCGCA
GGGCCTTAGGATGCCGCCCC

Downstream 100 bases:

>100_bases
GGCCGCGATCCGGGCGCGGGAATCCCGCCGGGGCGCCGGGCGTTGCACCGGCCGAGCCCCCGCCCGATGGTGCTGCCGGG
GCCCGCGAGGTAGGTTCGCG

Product: RarD protein, DMT superfamily transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MESRSRGLAYALAAYLLWGAFPLYFKALHGVPAPEILAHRVLWSVVLLAGIVLLGGRSGQLRDALRPGRRGVLAVTAVLI
AANWLIYIWAVNAGRVLEASLGYFVNPLVNVLLGMAFLRERLSRVQALAVALAGAGVAVLVVRLGTVPWLPLSLALSFGL
YGLLRKRAGIDPIGGLLAETALLAPVALAYLVLRGTGGEGAFGHGAWRTALLVAAGPVTTVPLVWFAIGVRSLRLSTMGL
VQYITPTIQFLMAVALFREPFTRTHAIAFGCIWVSLAAYTWDALARVRRVEAAASGAARAA

Sequences:

>Translated_301_residues
MESRSRGLAYALAAYLLWGAFPLYFKALHGVPAPEILAHRVLWSVVLLAGIVLLGGRSGQLRDALRPGRRGVLAVTAVLI
AANWLIYIWAVNAGRVLEASLGYFVNPLVNVLLGMAFLRERLSRVQALAVALAGAGVAVLVVRLGTVPWLPLSLALSFGL
YGLLRKRAGIDPIGGLLAETALLAPVALAYLVLRGTGGEGAFGHGAWRTALLVAAGPVTTVPLVWFAIGVRSLRLSTMGL
VQYITPTIQFLMAVALFREPFTRTHAIAFGCIWVSLAAYTWDALARVRRVEAAASGAARAA
>Mature_301_residues
MESRSRGLAYALAAYLLWGAFPLYFKALHGVPAPEILAHRVLWSVVLLAGIVLLGGRSGQLRDALRPGRRGVLAVTAVLI
AANWLIYIWAVNAGRVLEASLGYFVNPLVNVLLGMAFLRERLSRVQALAVALAGAGVAVLVVRLGTVPWLPLSLALSFGL
YGLLRKRAGIDPIGGLLAETALLAPVALAYLVLRGTGGEGAFGHGAWRTALLVAAGPVTTVPLVWFAIGVRSLRLSTMGL
VQYITPTIQFLMAVALFREPFTRTHAIAFGCIWVSLAAYTWDALARVRRVEAAASGAARAA

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=292, Percent_Identity=44.8630136986301, Blast_Score=231, Evalue=5e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31968; Mature: 31968

Theoretical pI: Translated: 11.70; Mature: 11.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESRSRGLAYALAAYLLWGAFPLYFKALHGVPAPEILAHRVLWSVVLLAGIVLLGGRSGQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH
LRDALRPGRRGVLAVTAVLIAANWLIYIWAVNAGRVLEASLGYFVNPLVNVLLGMAFLRE
HHHHHCCCCCHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RLSRVQALAVALAGAGVAVLVVRLGTVPWLPLSLALSFGLYGLLRKRAGIDPIGGLLAET
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ALLAPVALAYLVLRGTGGEGAFGHGAWRTALLVAAGPVTTVPLVWFAIGVRSLRLSTMGL
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VQYITPTIQFLMAVALFREPFTRTHAIAFGCIWVSLAAYTWDALARVRRVEAAASGAARA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
A
C
>Mature Secondary Structure
MESRSRGLAYALAAYLLWGAFPLYFKALHGVPAPEILAHRVLWSVVLLAGIVLLGGRSGQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH
LRDALRPGRRGVLAVTAVLIAANWLIYIWAVNAGRVLEASLGYFVNPLVNVLLGMAFLRE
HHHHHCCCCCHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RLSRVQALAVALAGAGVAVLVVRLGTVPWLPLSLALSFGLYGLLRKRAGIDPIGGLLAET
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ALLAPVALAYLVLRGTGGEGAFGHGAWRTALLVAAGPVTTVPLVWFAIGVRSLRLSTMGL
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VQYITPTIQFLMAVALFREPFTRTHAIAFGCIWVSLAAYTWDALARVRRVEAAASGAARA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]