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The map label for this gene is rarA [H]

Identifier: 220915883

GI number: 220915883

Start: 861550

End: 862863

Strand: Reverse

Name: rarA [H]

Synonym: A2cp1_0767

Alternate gene names: 220915883

Gene position: 862863-861550 (Counterclockwise)

Preceding gene: 220915888

Following gene: 220915882

Centisome position: 17.16

GC content: 73.21

Gene sequence:

>1314_bases
ATGGACCTCTTCGATCGCGCCGTCGCGGACGACCCGAGCGGCAAGCCGCTCGCCGAGCGGATGCGCCCCCGCCGCCTGGA
GGATTTCGCCGGCCAGGAGCACGTCCTGGGCCCCGGCACCGCGCTGCGGCGCTCGATCGAGGCGGACCAGGTGCCGTCGC
TCATCCTGTGGGGCCCGCCGGGCACCGGGAAGACCACGCTGGCGCGCATCGTGGCGCAGCGCACCGGCGCGGACTTCGTG
CCGTTCAGCGCGGTGCTGGGCGGGGTGAAGGAGATTCGCGAGATCGTGGCCGCGGCGCGCGACCGGCGCCGCATGCACCG
CAAGCGCACCATCCTGTTCGTCGACGAGATCCACCGCTTCACCCGCGCGCAGCAGGACGCGTTCCTGCCGCACGTGGAGG
ACGGGACCATCACGCTCATCGGCGCCACCACCGAGAACCCGTCGTTCGAGGTGAACGCCGCGCTCCTGTCGCGCTGCCGC
GTCGCGACGCTGCGGGCGCTCACCGAGGACGAGGTGGCGGCGCTGCTCGATCGCGCCGTGGCGGCGCCGGAGGGGCTGGC
GGGCGCGGTCGCGCTCACGCCCGAGGCCCGCGACACCATCGCCCGCCTCAGCTACGGCGACGCGCGCAAGGCGCTGAACG
CGCTCGAGGTGTCGGCCGCGGCGGTGCGGCTCGCCGGCCGCCCCGCGGTGGAGAAGGCCGACGCGGAAGAGGCGCTGCAG
GCACGCACCGTCAACTACGACAAGCAGGGCGAGGAGCACTACAACGTCGTCTCCGCGTTCATCAAGTCGCTCCGTGGCTC
GGACCCGGACGCCGCCGTCTACTACATGGTCCGGATGCTGGAGGCGGGCGAGGACCCGCGCTTCGTGCTCCGGCGGATGG
TGATCTTCGCGTCCGAGGACGTGGGCAACGCCGACCCGCAGGCGCTGCAGGTGGCGGTGTCGGCGCTGCAGGCGGTCGAG
CTGGTGGGGCTGCCGGAGGGCGTGCTGCCCATGAGCCAGGCCGCCATCTACCTGGCGCTCGCGCCCAAGTCGAACACCGC
CATCGCCGCCTACGGCAACGCGCGGCGCCTGGTGCGCGAGCGCGGGCCGCTGCCGGTGCCGCTCAAGCTCCGCAACGCGC
CCACCAAGCTGATGGAGGGGCTCGGCTACGGCGGCGGCTACCGATACCCGCACAACTTCGAGGGCCACTACGTGGCCGAG
GAGTACCTGCCCGACGCGCTCCGTGGCGAGCAGGTGGTCCAGCTCTCCGAGAATGGCCTGGAGAAGGCGCTGGGCGAGCG
GCTCCGGGCGCTGCGGGAGAAGGCCGGGAAGTAG

Upstream 100 bases:

>100_bases
TCTCCGACGCCTCGGCGCTCGAGACCTTGTGCACGATCCCCACGCGCTTCGGCACGGGACACGGATGGCCGTCCATGCGG
AGCATTATATAAGCGGTTTC

Downstream 100 bases:

>100_bases
GGCGGCGCGGCCCGTCCTCGGCTAGGCTGCCCCGATGCTCCTGTACCTGCACGGCTTCGCCTCCGGGCCCTCCTCGACCA
AGGCCCGCGCGCTGGCCTCG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MDLFDRAVADDPSGKPLAERMRPRRLEDFAGQEHVLGPGTALRRSIEADQVPSLILWGPPGTGKTTLARIVAQRTGADFV
PFSAVLGGVKEIREIVAAARDRRRMHRKRTILFVDEIHRFTRAQQDAFLPHVEDGTITLIGATTENPSFEVNAALLSRCR
VATLRALTEDEVAALLDRAVAAPEGLAGAVALTPEARDTIARLSYGDARKALNALEVSAAAVRLAGRPAVEKADAEEALQ
ARTVNYDKQGEEHYNVVSAFIKSLRGSDPDAAVYYMVRMLEAGEDPRFVLRRMVIFASEDVGNADPQALQVAVSALQAVE
LVGLPEGVLPMSQAAIYLALAPKSNTAIAAYGNARRLVRERGPLPVPLKLRNAPTKLMEGLGYGGGYRYPHNFEGHYVAE
EYLPDALRGEQVVQLSENGLEKALGERLRALREKAGK

Sequences:

>Translated_437_residues
MDLFDRAVADDPSGKPLAERMRPRRLEDFAGQEHVLGPGTALRRSIEADQVPSLILWGPPGTGKTTLARIVAQRTGADFV
PFSAVLGGVKEIREIVAAARDRRRMHRKRTILFVDEIHRFTRAQQDAFLPHVEDGTITLIGATTENPSFEVNAALLSRCR
VATLRALTEDEVAALLDRAVAAPEGLAGAVALTPEARDTIARLSYGDARKALNALEVSAAAVRLAGRPAVEKADAEEALQ
ARTVNYDKQGEEHYNVVSAFIKSLRGSDPDAAVYYMVRMLEAGEDPRFVLRRMVIFASEDVGNADPQALQVAVSALQAVE
LVGLPEGVLPMSQAAIYLALAPKSNTAIAAYGNARRLVRERGPLPVPLKLRNAPTKLMEGLGYGGGYRYPHNFEGHYVAE
EYLPDALRGEQVVQLSENGLEKALGERLRALREKAGK
>Mature_437_residues
MDLFDRAVADDPSGKPLAERMRPRRLEDFAGQEHVLGPGTALRRSIEADQVPSLILWGPPGTGKTTLARIVAQRTGADFV
PFSAVLGGVKEIREIVAAARDRRRMHRKRTILFVDEIHRFTRAQQDAFLPHVEDGTITLIGATTENPSFEVNAALLSRCR
VATLRALTEDEVAALLDRAVAAPEGLAGAVALTPEARDTIARLSYGDARKALNALEVSAAAVRLAGRPAVEKADAEEALQ
ARTVNYDKQGEEHYNVVSAFIKSLRGSDPDAAVYYMVRMLEAGEDPRFVLRRMVIFASEDVGNADPQALQVAVSALQAVE
LVGLPEGVLPMSQAAIYLALAPKSNTAIAAYGNARRLVRERGPLPVPLKLRNAPTKLMEGLGYGGGYRYPHNFEGHYVAE
EYLPDALRGEQVVQLSENGLEKALGERLRALREKAGK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=435, Percent_Identity=46.6666666666667, Blast_Score=377, Evalue=1e-105,
Organism=Homo sapiens, GI18426904, Length=435, Percent_Identity=41.6091954022989, Blast_Score=316, Evalue=3e-86,
Organism=Homo sapiens, GI6677723, Length=214, Percent_Identity=27.5700934579439, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1787119, Length=429, Percent_Identity=48.951048951049, Blast_Score=378, Evalue=1e-106,
Organism=Saccharomyces cerevisiae, GI6324111, Length=420, Percent_Identity=40.2380952380952, Blast_Score=314, Evalue=1e-86,
Organism=Saccharomyces cerevisiae, GI6324039, Length=214, Percent_Identity=26.1682242990654, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI18859927, Length=225, Percent_Identity=25.7777777777778, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI19921076, Length=214, Percent_Identity=27.5700934579439, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47496; Mature: 47496

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFDRAVADDPSGKPLAERMRPRRLEDFAGQEHVLGPGTALRRSIEADQVPSLILWGPP
CCHHHHHHCCCCCCCCHHHHHCCHHHHHHCCCCCCCCCCHHHHHHCCHHCCCEEEEECCC
GTGKTTLARIVAQRTGADFVPFSAVLGGVKEIREIVAAARDRRRMHRKRTILFVDEIHRF
CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHH
TRAQQDAFLPHVEDGTITLIGATTENPSFEVNAALLSRCRVATLRALTEDEVAALLDRAV
HHHHHHHCCCCCCCCEEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAPEGLAGAVALTPEARDTIARLSYGDARKALNALEVSAAAVRLAGRPAVEKADAEEALQ
CCCCCCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
ARTVNYDKQGEEHYNVVSAFIKSLRGSDPDAAVYYMVRMLEAGEDPRFVLRRMVIFASED
HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
VGNADPQALQVAVSALQAVELVGLPEGVLPMSQAAIYLALAPKSNTAIAAYGNARRLVRE
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEECCCHHHHHHH
RGPLPVPLKLRNAPTKLMEGLGYGGGYRYPHNFEGHYVAEEYLPDALRGEQVVQLSENGL
CCCCCCCEEECCCHHHHHHHCCCCCCCCCCCCCCCCEEHHHHCCHHHCCCCEEHHHHHHH
EKALGERLRALREKAGK
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLFDRAVADDPSGKPLAERMRPRRLEDFAGQEHVLGPGTALRRSIEADQVPSLILWGPP
CCHHHHHHCCCCCCCCHHHHHCCHHHHHHCCCCCCCCCCHHHHHHCCHHCCCEEEEECCC
GTGKTTLARIVAQRTGADFVPFSAVLGGVKEIREIVAAARDRRRMHRKRTILFVDEIHRF
CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHH
TRAQQDAFLPHVEDGTITLIGATTENPSFEVNAALLSRCRVATLRALTEDEVAALLDRAV
HHHHHHHCCCCCCCCEEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAPEGLAGAVALTPEARDTIARLSYGDARKALNALEVSAAAVRLAGRPAVEKADAEEALQ
CCCCCCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
ARTVNYDKQGEEHYNVVSAFIKSLRGSDPDAAVYYMVRMLEAGEDPRFVLRRMVIFASED
HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
VGNADPQALQVAVSALQAVELVGLPEGVLPMSQAAIYLALAPKSNTAIAAYGNARRLVRE
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEECCCHHHHHHH
RGPLPVPLKLRNAPTKLMEGLGYGGGYRYPHNFEGHYVAEEYLPDALRGEQVVQLSENGL
CCCCCCCEEECCCHHHHHHHCCCCCCCCCCCCCCCCEEHHHHCCHHHCCCCEEHHHHHHH
EKALGERLRALREKAGK
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]