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The map label for this gene is nifU [H]

Identifier: 220915738

GI number: 220915738

Start: 697328

End: 697789

Strand: Direct

Name: nifU [H]

Synonym: A2cp1_0619

Alternate gene names: 220915738

Gene position: 697328-697789 (Clockwise)

Preceding gene: 220915737

Following gene: 220915739

Centisome position: 13.87

GC content: 66.23

Gene sequence:

>462_bases
ATGGCGTACTCCGAGAAGCTCATCGACCACTACGAGCACCCCCGCAACGTCGGCTCGCTCGACAAGAACGATCCGGACGT
CGGCACGGGCCTGGTGGGCGCCCCGGCCTGCGGCGACGTGATGAAGCTGCAGATCAAGGTCAGCGACGACGGCGTCATCG
AGGACGCGAAGTTCAAGACGTTCGGCTGCGGGTCGGCCATCGCCTCGTCGTCGCTCGTGACCGAGTGGGTGAAGGGCCGG
ACGGTGGAGGAGGCCCTCACCATCAAGAACACCGACGTGGCGAACGAGCTGAACCTGCCGCCGGTCAAGATCCACTGCTC
GGTCCTGGCGGAGGATGCCATCAAGGCGGCGGTGGCCGACTGGCAGAAGAAGCACGGCCGGGAGCCGTCGGTGAAGCCGA
ACACGGTCCAGGGCGATCGCAGCGCGCTCATCGAGAAGGGCGTGCTGAAGTCCGGGATCTAG

Upstream 100 bases:

>100_bases
GACGGCGTCGACCTGAACCAGATCGAGTGGGCGAACCCACACTAGGACCGGGACTGCTCGAGCCGGTCCACGTGGACGGG
AACGAGGGAAGGAACGACCG

Downstream 100 bases:

>100_bases
GAGCGCGGGACATGGCGGCGGCGATCGAGATCAGCGAGAAGGCGGCGGTGCAGATCAAGGCGCTCGGCGCGCAGAAGGGC
ACGCCCGCGGGCGGGCTCCG

Product: scaffold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MAYSEKLIDHYEHPRNVGSLDKNDPDVGTGLVGAPACGDVMKLQIKVSDDGVIEDAKFKTFGCGSAIASSSLVTEWVKGR
TVEEALTIKNTDVANELNLPPVKIHCSVLAEDAIKAAVADWQKKHGREPSVKPNTVQGDRSALIEKGVLKSGI

Sequences:

>Translated_153_residues
MAYSEKLIDHYEHPRNVGSLDKNDPDVGTGLVGAPACGDVMKLQIKVSDDGVIEDAKFKTFGCGSAIASSSLVTEWVKGR
TVEEALTIKNTDVANELNLPPVKIHCSVLAEDAIKAAVADWQKKHGREPSVKPNTVQGDRSALIEKGVLKSGI
>Mature_152_residues
AYSEKLIDHYEHPRNVGSLDKNDPDVGTGLVGAPACGDVMKLQIKVSDDGVIEDAKFKTFGCGSAIASSSLVTEWVKGRT
VEEALTIKNTDVANELNLPPVKIHCSVLAEDAIKAAVADWQKKHGREPSVKPNTVQGDRSALIEKGVLKSGI

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=123, Percent_Identity=77.2357723577236, Blast_Score=204, Evalue=3e-53,
Organism=Homo sapiens, GI24307953, Length=126, Percent_Identity=76.1904761904762, Blast_Score=199, Evalue=6e-52,
Organism=Escherichia coli, GI1788878, Length=125, Percent_Identity=77.6, Blast_Score=214, Evalue=1e-57,
Organism=Caenorhabditis elegans, GI17543474, Length=126, Percent_Identity=71.4285714285714, Blast_Score=198, Evalue=1e-51,
Organism=Saccharomyces cerevisiae, GI6325122, Length=124, Percent_Identity=71.7741935483871, Blast_Score=190, Evalue=7e-50,
Organism=Saccharomyces cerevisiae, GI6324800, Length=130, Percent_Identity=66.9230769230769, Blast_Score=183, Evalue=9e-48,
Organism=Drosophila melanogaster, GI21355597, Length=126, Percent_Identity=72.2222222222222, Blast_Score=196, Evalue=4e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16352; Mature: 16221

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSEKLIDHYEHPRNVGSLDKNDPDVGTGLVGAPACGDVMKLQIKVSDDGVIEDAKFKT
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCC
FGCGSAIASSSLVTEWVKGRTVEEALTIKNTDVANELNLPPVKIHCSVLAEDAIKAAVAD
CCCCHHHHHHHHHHHHHCCCCHHHHHEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHH
WQKKHGREPSVKPNTVQGDRSALIEKGVLKSGI
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AYSEKLIDHYEHPRNVGSLDKNDPDVGTGLVGAPACGDVMKLQIKVSDDGVIEDAKFKT
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCC
FGCGSAIASSSLVTEWVKGRTVEEALTIKNTDVANELNLPPVKIHCSVLAEDAIKAAVAD
CCCCHHHHHHHHHHHHHCCCCHHHHHEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHH
WQKKHGREPSVKPNTVQGDRSALIEKGVLKSGI
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]