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The map label for this gene is yddE [C]

Identifier: 220915719

GI number: 220915719

Start: 676419

End: 677219

Strand: Direct

Name: yddE [C]

Synonym: A2cp1_0600

Alternate gene names: 220915719

Gene position: 676419-677219 (Clockwise)

Preceding gene: 220915718

Following gene: 220915724

Centisome position: 13.45

GC content: 77.28

Gene sequence:

>801_bases
ATGCGCATCCCGATCTGGCAGGTGGACGCCTTCGTCACCGGCGGCGTCTTCACCGGCAACCCCGCCGCGGTCTGCCCCCT
CGACGCCTGGCTGCCCGACGCCACGCTGCTCGCCATCGCCGCCGAGAACGCGCTCTCCGAGACCGCGTTCCTGGTCCCGG
AGGGCGAGGGCTGGCACCTGCGCTGGTTCACGCCCGAGGTCGAGGTCGAGCTGTGCGGGCACGCGACGCTCGCCTCGGCG
CACGTGGTCTTCGAGCACCTGGCCCGCGGGCGCGACGCCGTCGCGTTCCGGACGCAGGCCGGCACGCTCACGGTCACGCG
CGACGGCGCCGGCCGCATCGCCCTCTCGCTGCCCCGCCGTCCGCCGGCGCCGGCCGGGCCGCCGCCCGCGCTGGTGCGGG
CCCTCGGCGGCCGCGCGCCGGACGCGACGCTGCTCGGCCGCGACTACGTCGCGGTGCTCCCGACGGAGGACGAGGTGCGC
GCGCTCCGGCCGGACCTCTCGGCCGTGGCGGAGCTGCCCGGCCACGGCATCGTGGTCACCGCGCCGGCGAGCACGCCCGG
GGTGGACTTCGTCTCGCGCTACTTCGCCCCGCAGGTCGGCATCCCCGAGGACCCGGTCACCGGCTCGGCGCACTGCACGC
TGGTGCCCTACTGGGCGGACCGGCTCGGCCGTCGGACGCTGGAGGCGCTGCAGGTCTCGCGGCGCGGCGGCCGGCTCGCG
TGCGAGGACCAGCCGGACGCCGGAAAGGTGCGCGTCGCCGGCCGGGCCGCCGAGTACCTGTCCGGCTCCATCGAGGTCTG
A

Upstream 100 bases:

>100_bases
GCCGGGCGGCTTCGCGTTCGAGGGCAGCGACGCGGCCGAGGGGCTGCGCGCGCTCCTCGCGGGCGCTGGCGCGCGCACGC
CGCTCGTGTAGAACGGCCGC

Downstream 100 bases:

>100_bases
GCCCGGCGAGCGGCGCGAACGGCGGCGCTAGCCGGGATCCAGCCCGCCCGCCGCGAGCGCGGCGCGGGCCACCGGGCTGG
TGAGCAGCAGCCGGTACTCG

Product: phenazine biosynthesis protein PhzF family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MRIPIWQVDAFVTGGVFTGNPAAVCPLDAWLPDATLLAIAAENALSETAFLVPEGEGWHLRWFTPEVEVELCGHATLASA
HVVFEHLARGRDAVAFRTQAGTLTVTRDGAGRIALSLPRRPPAPAGPPPALVRALGGRAPDATLLGRDYVAVLPTEDEVR
ALRPDLSAVAELPGHGIVVTAPASTPGVDFVSRYFAPQVGIPEDPVTGSAHCTLVPYWADRLGRRTLEALQVSRRGGRLA
CEDQPDAGKVRVAGRAAEYLSGSIEV

Sequences:

>Translated_266_residues
MRIPIWQVDAFVTGGVFTGNPAAVCPLDAWLPDATLLAIAAENALSETAFLVPEGEGWHLRWFTPEVEVELCGHATLASA
HVVFEHLARGRDAVAFRTQAGTLTVTRDGAGRIALSLPRRPPAPAGPPPALVRALGGRAPDATLLGRDYVAVLPTEDEVR
ALRPDLSAVAELPGHGIVVTAPASTPGVDFVSRYFAPQVGIPEDPVTGSAHCTLVPYWADRLGRRTLEALQVSRRGGRLA
CEDQPDAGKVRVAGRAAEYLSGSIEV
>Mature_266_residues
MRIPIWQVDAFVTGGVFTGNPAAVCPLDAWLPDATLLAIAAENALSETAFLVPEGEGWHLRWFTPEVEVELCGHATLASA
HVVFEHLARGRDAVAFRTQAGTLTVTRDGAGRIALSLPRRPPAPAGPPPALVRALGGRAPDATLLGRDYVAVLPTEDEVR
ALRPDLSAVAELPGHGIVVTAPASTPGVDFVSRYFAPQVGIPEDPVTGSAHCTLVPYWADRLGRRTLEALQVSRRGGRLA
CEDQPDAGKVRVAGRAAEYLSGSIEV

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=294, Percent_Identity=37.4149659863946, Blast_Score=155, Evalue=3e-38,
Organism=Homo sapiens, GI74316009, Length=258, Percent_Identity=36.4341085271318, Blast_Score=132, Evalue=4e-31,
Organism=Escherichia coli, GI1787737, Length=288, Percent_Identity=30.5555555555556, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17542160, Length=313, Percent_Identity=33.5463258785943, Blast_Score=150, Evalue=7e-37,
Organism=Caenorhabditis elegans, GI17542154, Length=313, Percent_Identity=33.5463258785943, Blast_Score=150, Evalue=7e-37,
Organism=Caenorhabditis elegans, GI17542158, Length=314, Percent_Identity=33.4394904458599, Blast_Score=132, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17542152, Length=314, Percent_Identity=33.4394904458599, Blast_Score=132, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 28126; Mature: 28126

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIPIWQVDAFVTGGVFTGNPAAVCPLDAWLPDATLLAIAAENALSETAFLVPEGEGWHL
CCCCEEEECEEEECCEEECCCCEEEEHHHCCCCCEEEEEECCCCCCCEEEEEECCCCEEE
RWFTPEVEVELCGHATLASAHVVFEHLARGRDAVAFRTQAGTLTVTRDGAGRIALSLPRR
EEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCEEEEECCCC
PPAPAGPPPALVRALGGRAPDATLLGRDYVAVLPTEDEVRALRPDLSAVAELPGHGIVVT
CCCCCCCCHHHHHHHCCCCCCCEEECCCEEEEECCCHHHHHHCCCHHHHHHCCCCCEEEE
APASTPGVDFVSRYFAPQVGIPEDPVTGSAHCTLVPYWADRLGRRTLEALQVSRRGGRLA
CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCEEE
CEDQPDAGKVRVAGRAAEYLSGSIEV
ECCCCCCCEEEEECHHHHHHCCCCCC
>Mature Secondary Structure
MRIPIWQVDAFVTGGVFTGNPAAVCPLDAWLPDATLLAIAAENALSETAFLVPEGEGWHL
CCCCEEEECEEEECCEEECCCCEEEEHHHCCCCCEEEEEECCCCCCCEEEEEECCCCEEE
RWFTPEVEVELCGHATLASAHVVFEHLARGRDAVAFRTQAGTLTVTRDGAGRIALSLPRR
EEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCEEEEECCCC
PPAPAGPPPALVRALGGRAPDATLLGRDYVAVLPTEDEVRALRPDLSAVAELPGHGIVVT
CCCCCCCCHHHHHHHCCCCCCCEEECCCEEEEECCCHHHHHHCCCHHHHHHCCCCCEEEE
APASTPGVDFVSRYFAPQVGIPEDPVTGSAHCTLVPYWADRLGRRTLEALQVSRRGGRLA
CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCEEE
CEDQPDAGKVRVAGRAAEYLSGSIEV
ECCCCCCCEEEEECHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]