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The map label for this gene is yafC [H]

Identifier: 220915698

GI number: 220915698

Start: 653730

End: 654689

Strand: Direct

Name: yafC [H]

Synonym: A2cp1_0579

Alternate gene names: 220915698

Gene position: 653730-654689 (Clockwise)

Preceding gene: 220915694

Following gene: 220915701

Centisome position: 13.0

GC content: 78.75

Gene sequence:

>960_bases
ATGGACCGGCTGCACCAGCTCCAGGTGTTCGTGGCCGTGGCGGAGGCGGGCGGGTTCGCCCGGGCGGGCGCGCGGCTCCG
CCTGTCGCCGCCCGCGGTGACGCGCGCGATCGCCGCGCTGGAGGGGCGGGTCGGCGCGCGCCTGTTCAACCGCACCACCC
GCACGGTGCGGCCGACCGAGGCAGGGCTCCGGTTCCTCGAGCCCGCGCGCCGGGTGCTCGCGGACCTCGAGACCGCCGAG
CGCGAGGCCGCCGGCGAGGGCGCGGCGCCCGCCGGCCACCTGACGCTCACCGCCTCGGTGACGTTCGGCCGGTGGGCGCT
CGCGCCGGTGGTGCGCGCGTTCCTGGGCCTGCACCCGGGCGTCACCGCCTCGCTCGTGCTGGTGGACCGCGTCGTGAACC
TGGTGGAGGAGGGGGTGGACGTGGCGGTGCGCATCGGGCAGCTCCCCGACTCCGACCTGGTGGCGCGGAAGGTCGGCGAG
ATCCGGCGGGTGCTGGTGGCGAGCCCGGCGTACCTGCGCGCGCACGGGGCCCCGTCCTCGCCCGCCCGGCTGCGAGCGCA
CGCGGTCATCGCGTTCACCGGCCTGCACGCCGGGCGCGAGTGGCGCTTCGTGGACGGCGGCCGGCAGGTGGCGGTGCCGG
TCGCGCCGCGCCTGGTGGTGAACGACGCGCTCGCGGCGCTGGACGCCGCCGAGGCCGGCGACGGCATCACGCTCGCGCTC
TCCTACATGGTGGCGGAGCGGATCGCCGCCGGGCGGCTCGTCCCGGTGCTGGGCCGCTTCGCCCCGCCGCCCGTGCCGGT
CCAGCTCGTCCACCCGCACGCGCGGCTGGTCGCGCCCAAGGTGCGCGCGTTCGTGGACTTCGCCGCGCCGCGCCTCGCGG
CGGCGATCGCGGCCCTGCCGCCCATCCCGGAGCGGTCGCCGAGATCGCCGCGGCGCCCGGACCGCGCTACTCGCGCATGA

Upstream 100 bases:

>100_bases
GCGGGGGCGGGAGTGCCCCCGGACGCGAGAGAAGGTGGCGCGGGCGACCGCCCGAAAGAATACGTGGTGCGCGCAAGGCA
TTCTTCCGCGGAGAGGAACG

Downstream 100 bases:

>100_bases
GCGGGTTCGACCGCGTGCCCGCGGCGCCGGGCTCCCGGGACAGCCGGGCCCAGTGGCGATCGCCCGGGAAGTGCGAGACG
AGCGCCGCGAACGCGATCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MDRLHQLQVFVAVAEAGGFARAGARLRLSPPAVTRAIAALEGRVGARLFNRTTRTVRPTEAGLRFLEPARRVLADLETAE
REAAGEGAAPAGHLTLTASVTFGRWALAPVVRAFLGLHPGVTASLVLVDRVVNLVEEGVDVAVRIGQLPDSDLVARKVGE
IRRVLVASPAYLRAHGAPSSPARLRAHAVIAFTGLHAGREWRFVDGGRQVAVPVAPRLVVNDALAALDAAEAGDGITLAL
SYMVAERIAAGRLVPVLGRFAPPPVPVQLVHPHARLVAPKVRAFVDFAAPRLAAAIAALPPIPERSPRSPRRPDRATRA

Sequences:

>Translated_319_residues
MDRLHQLQVFVAVAEAGGFARAGARLRLSPPAVTRAIAALEGRVGARLFNRTTRTVRPTEAGLRFLEPARRVLADLETAE
REAAGEGAAPAGHLTLTASVTFGRWALAPVVRAFLGLHPGVTASLVLVDRVVNLVEEGVDVAVRIGQLPDSDLVARKVGE
IRRVLVASPAYLRAHGAPSSPARLRAHAVIAFTGLHAGREWRFVDGGRQVAVPVAPRLVVNDALAALDAAEAGDGITLAL
SYMVAERIAAGRLVPVLGRFAPPPVPVQLVHPHARLVAPKVRAFVDFAAPRLAAAIAALPPIPERSPRSPRRPDRATRA
>Mature_319_residues
MDRLHQLQVFVAVAEAGGFARAGARLRLSPPAVTRAIAALEGRVGARLFNRTTRTVRPTEAGLRFLEPARRVLADLETAE
REAAGEGAAPAGHLTLTASVTFGRWALAPVVRAFLGLHPGVTASLVLVDRVVNLVEEGVDVAVRIGQLPDSDLVARKVGE
IRRVLVASPAYLRAHGAPSSPARLRAHAVIAFTGLHAGREWRFVDGGRQVAVPVAPRLVVNDALAALDAAEAGDGITLAL
SYMVAERIAAGRLVPVLGRFAPPPVPVQLVHPHARLVAPKVRAFVDFAAPRLAAAIAALPPIPERSPRSPRRPDRATRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=32.8767123287671, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI145693193, Length=301, Percent_Identity=33.2225913621262, Blast_Score=154, Evalue=8e-39,
Organism=Escherichia coli, GI1787589, Length=285, Percent_Identity=32.9824561403509, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI1789639, Length=288, Percent_Identity=28.4722222222222, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=28.8194444444444, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI87081978, Length=285, Percent_Identity=34.3859649122807, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=28.7719298245614, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1789173, Length=256, Percent_Identity=29.296875, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788706, Length=295, Percent_Identity=24.406779661017, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787879, Length=155, Percent_Identity=36.1290322580645, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI157672245, Length=120, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI2367136, Length=120, Percent_Identity=38.3333333333333, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1788748, Length=177, Percent_Identity=31.0734463276836, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787601, Length=135, Percent_Identity=28.1481481481481, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33745; Mature: 33745

Theoretical pI: Translated: 12.03; Mature: 12.03

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLHQLQVFVAVAEAGGFARAGARLRLSPPAVTRAIAALEGRVGARLFNRTTRTVRPTE
CCHHHHHHHHEEEHHCCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
AGLRFLEPARRVLADLETAEREAAGEGAAPAGHLTLTASVTFGRWALAPVVRAFLGLHPG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCC
VTASLVLVDRVVNLVEEGVDVAVRIGQLPDSDLVARKVGEIRRVLVASPAYLRAHGAPSS
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHEEECCCCCC
PARLRAHAVIAFTGLHAGREWRFVDGGRQVAVPVAPRLVVNDALAALDAAEAGDGITLAL
CHHHHHEEEEEEEECCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHH
SYMVAERIAAGRLVPVLGRFAPPPVPVQLVHPHARLVAPKVRAFVDFAAPRLAAAIAALP
HHHHHHHHHCCCHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PIPERSPRSPRRPDRATRA
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDRLHQLQVFVAVAEAGGFARAGARLRLSPPAVTRAIAALEGRVGARLFNRTTRTVRPTE
CCHHHHHHHHEEEHHCCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
AGLRFLEPARRVLADLETAEREAAGEGAAPAGHLTLTASVTFGRWALAPVVRAFLGLHPG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCC
VTASLVLVDRVVNLVEEGVDVAVRIGQLPDSDLVARKVGEIRRVLVASPAYLRAHGAPSS
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHEEECCCCCC
PARLRAHAVIAFTGLHAGREWRFVDGGRQVAVPVAPRLVVNDALAALDAAEAGDGITLAL
CHHHHHEEEEEEEECCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHH
SYMVAERIAAGRLVPVLGRFAPPPVPVQLVHPHARLVAPKVRAFVDFAAPRLAAAIAALP
HHHHHHHHHCCCHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PIPERSPRSPRRPDRATRA
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]