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The map label for this gene is rbcR [H]

Identifier: 220915690

GI number: 220915690

Start: 647843

End: 648820

Strand: Reverse

Name: rbcR [H]

Synonym: A2cp1_0571

Alternate gene names: 220915690

Gene position: 648820-647843 (Counterclockwise)

Preceding gene: 220915693

Following gene: 220915687

Centisome position: 12.9

GC content: 78.63

Gene sequence:

>978_bases
ATGGACCGGGAGCAGCTCGCGGCGTTCGACCAGGTGGCGCGGGAGGCGAGCTTCACCCGCGCAGCCATCGCGCTCGGCCT
CGGGCAGCCCGCGGTCAGCGCGCGCATCCGGGCGCTGGAGGACCAGGTCGGGGGCGCGCTCTTCACGCGCGGCCGGCGGG
TGTCGCTCACCGCGCTCGGCGAGAGCCTGCTGCCGTACGCGCGGCGCGCGCTCGAGGTCCTCTCCGAGGGGCTGGAGGCG
GCGCGGCTGGCGCAGATCGGGCAGCGCGGCCGCGTGCGGCTCGGCACGCTCGGCTCGGTCGCGGGCGGGCTGGTGGGGCC
GGCGCTGGGCGCGTTCGTCCGCGGCCACCCGGAGGTCGAGTGCCTGGTGCGGGCCGGCGACCACGAGCGGATCGTGGCGC
TGCTGCTCGACGGGCTGGTCGATCTCGGGATCGTGACCTGGCCGTGCCCCGAGCCGGTCGCCGCCGAGCTGCAGGACGTG
CTGCGGTTCCACGAGCCGGTGCTGCTGGTGGCGCGCCCCGGCCACCCCGTGACGGCGCGCCCGGACCTCACCGAGGGTGA
GCTGGTCCGCCTGGGCCGGCCCATGTTCCGGCTGCGCTGGTGGCAGGCGCCCCACCCGCTCCTCACCCGCCTCGCCGAGC
AGGCCGGCACGCCGGTGGAGATCCCCATGGAGACGGCGCGCGCGCTGGCGCTGGAGGGTGCAGGGGTCGGGTTCTTCGTG
CGGACCTACGTCGCGGAGGACCTGGCGCGCGGCACGCTGGTGGAGGTCGCGGTGCGCGACCTCCCGCCCGTGTTCCGCGA
CACCGCGCTGGTGCGGCGCCGGCGCGGCGGCCCGCTCTCGCCGGCCGCGGCCGCGCTGGTGGAGCTGCTGCGCCGGCAGG
CGGCGGCGCTCGGGGTGCTGGCGGGTGGGCGCGGCCCGGTCAGCGCGCGGCGCCGTTCCCGGGGGGCTGCTCCGATCCGC
CGCCGGGACCGAAGGTGA

Upstream 100 bases:

>100_bases
GGCGGTGCGGCCCCGGACCCGCTCAACATAGCGCCGGCACTCGATTGACACACCCGATGCGCCATATAGTTCGCATCGAC
GTCCTCGATGGAGGCTCGGC

Downstream 100 bases:

>100_bases
GCTGGTACGCGAGGTAGGCCTGCGCGGCGCGGGAGCCGAGCGCGCGGCCCGCCGAGACGAGCACGTGGTGCAGCTCGCCC
GGTCGCCAGGGCGGTGATGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MDREQLAAFDQVAREASFTRAAIALGLGQPAVSARIRALEDQVGGALFTRGRRVSLTALGESLLPYARRALEVLSEGLEA
ARLAQIGQRGRVRLGTLGSVAGGLVGPALGAFVRGHPEVECLVRAGDHERIVALLLDGLVDLGIVTWPCPEPVAAELQDV
LRFHEPVLLVARPGHPVTARPDLTEGELVRLGRPMFRLRWWQAPHPLLTRLAEQAGTPVEIPMETARALALEGAGVGFFV
RTYVAEDLARGTLVEVAVRDLPPVFRDTALVRRRRGGPLSPAAAALVELLRRQAAALGVLAGGRGPVSARRRSRGAAPIR
RRDRR

Sequences:

>Translated_325_residues
MDREQLAAFDQVAREASFTRAAIALGLGQPAVSARIRALEDQVGGALFTRGRRVSLTALGESLLPYARRALEVLSEGLEA
ARLAQIGQRGRVRLGTLGSVAGGLVGPALGAFVRGHPEVECLVRAGDHERIVALLLDGLVDLGIVTWPCPEPVAAELQDV
LRFHEPVLLVARPGHPVTARPDLTEGELVRLGRPMFRLRWWQAPHPLLTRLAEQAGTPVEIPMETARALALEGAGVGFFV
RTYVAEDLARGTLVEVAVRDLPPVFRDTALVRRRRGGPLSPAAAALVELLRRQAAALGVLAGGRGPVSARRRSRGAAPIR
RRDRR
>Mature_325_residues
MDREQLAAFDQVAREASFTRAAIALGLGQPAVSARIRALEDQVGGALFTRGRRVSLTALGESLLPYARRALEVLSEGLEA
ARLAQIGQRGRVRLGTLGSVAGGLVGPALGAFVRGHPEVECLVRAGDHERIVALLLDGLVDLGIVTWPCPEPVAAELQDV
LRFHEPVLLVARPGHPVTARPDLTEGELVRLGRPMFRLRWWQAPHPLLTRLAEQAGTPVEIPMETARALALEGAGVGFFV
RTYVAEDLARGTLVEVAVRDLPPVFRDTALVRRRRGGPLSPAAAALVELLRRQAAALGVLAGGRGPVSARRRSRGAAPIR
RRDRR

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=304, Percent_Identity=27.9605263157895, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787879, Length=189, Percent_Identity=31.7460317460317, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI2367136, Length=270, Percent_Identity=32.2222222222222, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI48994962, Length=152, Percent_Identity=37.5, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081904, Length=268, Percent_Identity=29.8507462686567, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787601, Length=305, Percent_Identity=27.2131147540984, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1788748, Length=307, Percent_Identity=27.6872964169381, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=26.4604810996564, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788481, Length=277, Percent_Identity=25.9927797833935, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788887, Length=195, Percent_Identity=31.7948717948718, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI145693193, Length=156, Percent_Identity=36.5384615384615, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789173, Length=146, Percent_Identity=35.6164383561644, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787589, Length=125, Percent_Identity=35.2, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34957; Mature: 34957

Theoretical pI: Translated: 11.76; Mature: 11.76

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDREQLAAFDQVAREASFTRAAIALGLGQPAVSARIRALEDQVGGALFTRGRRVSLTALG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHCCCEEEHHHHH
ESLLPYARRALEVLSEGLEAARLAQIGQRGRVRLGTLGSVAGGLVGPALGAFVRGHPEVE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEE
CLVRAGDHERIVALLLDGLVDLGIVTWPCPEPVAAELQDVLRFHEPVLLVARPGHPVTAR
EEEECCCHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC
PDLTEGELVRLGRPMFRLRWWQAPHPLLTRLAEQAGTPVEIPMETARALALEGAGVGFFV
CCCCCCHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCCCEECCHHHHHHHHHCCCCCHHHH
RTYVAEDLARGTLVEVAVRDLPPVFRDTALVRRRRGGPLSPAAAALVELLRRQAAALGVL
HHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
AGGRGPVSARRRSRGAAPIRRRDRR
CCCCCCHHHHHHCCCCCCCHHCCCC
>Mature Secondary Structure
MDREQLAAFDQVAREASFTRAAIALGLGQPAVSARIRALEDQVGGALFTRGRRVSLTALG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHCCCEEEHHHHH
ESLLPYARRALEVLSEGLEAARLAQIGQRGRVRLGTLGSVAGGLVGPALGAFVRGHPEVE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEE
CLVRAGDHERIVALLLDGLVDLGIVTWPCPEPVAAELQDVLRFHEPVLLVARPGHPVTAR
EEEECCCHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC
PDLTEGELVRLGRPMFRLRWWQAPHPLLTRLAEQAGTPVEIPMETARALALEGAGVGFFV
CCCCCCHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCCCEECCHHHHHHHHHCCCCCHHHH
RTYVAEDLARGTLVEVAVRDLPPVFRDTALVRRRRGGPLSPAAAALVELLRRQAAALGVL
HHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
AGGRGPVSARRRSRGAAPIRRRDRR
CCCCCCHHHHHHCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]