Click here to switch to the map view.

The map label for this gene is rnk [H]

Identifier: 220915658

GI number: 220915658

Start: 618016

End: 618432

Strand: Direct

Name: rnk [H]

Synonym: A2cp1_0539

Alternate gene names: 220915658

Gene position: 618016-618432 (Clockwise)

Preceding gene: 220915657

Following gene: 220915663

Centisome position: 12.29

GC content: 77.22

Gene sequence:

>417_bases
ATGAGCCGCGACCGCATCTACGTCAGCGAGACCGATCACGAGCGCCTGCGGGCGCTGGTGGAGCAGCACCAGGAGGGCCG
CGACGCGGCCGCGGCGGAGCGGCTCGACGCCGAGCTCGACCGCGCCGTGCGCGTGCCGGACGGCCAGGTGCCGCCGGACG
TCGTCGCCATGAACTCGCGCGTGGTCTACGAGGACGGCGCGACCGGCCGCCTGCGCGAGGTCACGCTCGTCTACCCGACC
GCCGCGGACCTGCGGGAGGGCCGGCTGTCGGTGCTCGCGCCGGTGGGCGCGGCGCTGCTCGGGCTGTCCACCGGCCAGTC
CATCTCCTGGACGCTGCCGGACGGGCGCGAGGTCGAGCTGCGCGTGCGCTCGGTGCAGCAGCCCCCGGCCGCCCCGGCCG
CGAGCGCGGCGGTGTGA

Upstream 100 bases:

>100_bases
GCAGGACCGCCCGCTCGTCGCGCCGCCGCTCGAGGCCGCGCGCGGGCATTCACCGCTGGACACGCCCGGGCCAGGCCCGG
ACCGAGCGACTGGAGGAACC

Downstream 100 bases:

>100_bases
GCCCGCCGCGTCCGCTCAGCCGGCCTGCCCCGGGCCGGCCGGGGGCGGCGCGGCGGCCAGCGCCGGCCCGGGCTCCGGCT
CCGTCACCTCGAGGTGGACC

Product: GreA/GreB family elongation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MSRDRIYVSETDHERLRALVEQHQEGRDAAAAERLDAELDRAVRVPDGQVPPDVVAMNSRVVYEDGATGRLREVTLVYPT
AADLREGRLSVLAPVGAALLGLSTGQSISWTLPDGREVELRVRSVQQPPAAPAASAAV

Sequences:

>Translated_138_residues
MSRDRIYVSETDHERLRALVEQHQEGRDAAAAERLDAELDRAVRVPDGQVPPDVVAMNSRVVYEDGATGRLREVTLVYPT
AADLREGRLSVLAPVGAALLGLSTGQSISWTLPDGREVELRVRSVQQPPAAPAASAAV
>Mature_137_residues
SRDRIYVSETDHERLRALVEQHQEGRDAAAAERLDAELDRAVRVPDGQVPPDVVAMNSRVVYEDGATGRLREVTLVYPTA
ADLREGRLSVLAPVGAALLGLSTGQSISWTLPDGREVELRVRSVQQPPAAPAASAAV

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=131, Percent_Identity=44.2748091603053, Blast_Score=95, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14879; Mature: 14748

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRDRIYVSETDHERLRALVEQHQEGRDAAAAERLDAELDRAVRVPDGQVPPDVVAMNSR
CCCCEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEECCCCCCCCCEEEECCE
VVYEDGATGRLREVTLVYPTAADLREGRLSVLAPVGAALLGLSTGQSISWTLPDGREVEL
EEEECCCCCCEEEEEEEECCHHHHCCCCEEEHHHHHHHHHHCCCCCEEEEECCCCCEEEE
RVRSVQQPPAAPAASAAV
EEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
SRDRIYVSETDHERLRALVEQHQEGRDAAAAERLDAELDRAVRVPDGQVPPDVVAMNSR
CCCEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEECCCCCCCCCEEEECCE
VVYEDGATGRLREVTLVYPTAADLREGRLSVLAPVGAALLGLSTGQSISWTLPDGREVEL
EEEECCCCCCEEEEEEEECCHHHHCCCCEEEHHHHHHHHHHCCCCCEEEEECCCCCEEEE
RVRSVQQPPAAPAASAAV
EEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]