Click here to switch to the map view.

The map label for this gene is rbcR [H]

Identifier: 220915498

GI number: 220915498

Start: 424773

End: 425696

Strand: Reverse

Name: rbcR [H]

Synonym: A2cp1_0379

Alternate gene names: 220915498

Gene position: 425696-424773 (Counterclockwise)

Preceding gene: 220915500

Following gene: 220915497

Centisome position: 8.46

GC content: 78.14

Gene sequence:

>924_bases
ATGCCCCGCCTCGATCCGCGCCGCCTGCAGTCCTTCCGCGAGGTCGCGCTCGCCGGCCGCATCTCGGTCGCCGCGCGCAC
CCTCCACCTCTCGCCGTCCGCGCTCTCGGAGCAGGTCCGCGAGCTGGAGCGCACGTGCGGGCGGCCGCTCCTCCTTCGCA
CCGCCCACGGCGTCCAGCTCACGGCGGACGGGCAGCGGCTCCTCGAGCACGCGCAGCGCGTGGACGAGGCGCTGCGCGCG
GCGGAGGCCTCGATGGATCGCGAGGCGGAGGAGGGCGGTCCGCTCGTGCTGGGGGCGAGCCAGACCACCGCGGCCTGGGT
GGTCCCGCACCTCGTCGCGGAGCTCCGCCGCGCGCGGCCGGGCGTGGCGGTGCGCGTGGAGGTCGGCAACACCGACGCCG
TCCTCGGCTGGCTCGCCAAGGGCACCGTCCCGCTGGGCCTGGTGGAGGGGCTCTCCCGCGCGCCGCACGTCCGGCTGGAG
CCGTTCGCGCGGGACGAGATCGTCGCGGCGGCCTCGAGCGCCGCGCCGGCCGAGATCCTGCGCCTGCGCCGCGTCGCCGA
GCTGGACCGCGTGCCCATCGTGTGGCGCGAGGTCGGCTCCGGTACCCGCGCGGTGGTGGAGAAGGCGCTCCGGCGCGCGG
GCGTCCGCAGGACGCGCCGCCACGCCGACCTCGAGCTCGGGACGAACGACGCGGTGAAGGCCGCGGTGCAGCTCGGGCTG
GGCGTCGGGTTCCTGTCGCGCTGGGCCATCCGCACCGAGCTCGCCACCGGCGCGCTGCGCGCGATCCCGCTCGAGGGCCT
CCGCATCGAGCGCGCGTTCTCGTGGGCGCTCCCGGCCGGCGGGGTCTCCGGGATCGCCGGCCGCTTCCTGCGCGAGGCGC
AGCGGCTCGCGGCCGGGACGGTGCGCCCGGCCTGGTTCCCGTGA

Upstream 100 bases:

>100_bases
GGCGCGAGCAGGAAGCGCTGAGTCGGGTCGTCCGCGGCGCACGGCGCCGCACGCGATCCCGGCTCGGGCCGACGGGGGCC
GGATCCGCTACCCTGCCCGG

Downstream 100 bases:

>100_bases
GGCCGGCGGCGCCGCCGATGTCCCATCGGAAATGCCGGTGTGCCGCGGAGCCGCCGAGCGACTAGGTTCGCGCCGCATGG
AACGGTCCACCCCCGAGCCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MPRLDPRRLQSFREVALAGRISVAARTLHLSPSALSEQVRELERTCGRPLLLRTAHGVQLTADGQRLLEHAQRVDEALRA
AEASMDREAEEGGPLVLGASQTTAAWVVPHLVAELRRARPGVAVRVEVGNTDAVLGWLAKGTVPLGLVEGLSRAPHVRLE
PFARDEIVAAASSAAPAEILRLRRVAELDRVPIVWREVGSGTRAVVEKALRRAGVRRTRRHADLELGTNDAVKAAVQLGL
GVGFLSRWAIRTELATGALRAIPLEGLRIERAFSWALPAGGVSGIAGRFLREAQRLAAGTVRPAWFP

Sequences:

>Translated_307_residues
MPRLDPRRLQSFREVALAGRISVAARTLHLSPSALSEQVRELERTCGRPLLLRTAHGVQLTADGQRLLEHAQRVDEALRA
AEASMDREAEEGGPLVLGASQTTAAWVVPHLVAELRRARPGVAVRVEVGNTDAVLGWLAKGTVPLGLVEGLSRAPHVRLE
PFARDEIVAAASSAAPAEILRLRRVAELDRVPIVWREVGSGTRAVVEKALRRAGVRRTRRHADLELGTNDAVKAAVQLGL
GVGFLSRWAIRTELATGALRAIPLEGLRIERAFSWALPAGGVSGIAGRFLREAQRLAAGTVRPAWFP
>Mature_306_residues
PRLDPRRLQSFREVALAGRISVAARTLHLSPSALSEQVRELERTCGRPLLLRTAHGVQLTADGQRLLEHAQRVDEALRAA
EASMDREAEEGGPLVLGASQTTAAWVVPHLVAELRRARPGVAVRVEVGNTDAVLGWLAKGTVPLGLVEGLSRAPHVRLEP
FARDEIVAAASSAAPAEILRLRRVAELDRVPIVWREVGSGTRAVVEKALRRAGVRRTRRHADLELGTNDAVKAAVQLGLG
VGFLSRWAIRTELATGALRAIPLEGLRIERAFSWALPAGGVSGIAGRFLREAQRLAAGTVRPAWFP

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=271, Percent_Identity=30.6273062730627, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI87081904, Length=146, Percent_Identity=32.1917808219178, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1787601, Length=142, Percent_Identity=28.8732394366197, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787806, Length=265, Percent_Identity=23.7735849056604, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790208, Length=245, Percent_Identity=25.3061224489796, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33157; Mature: 33026

Theoretical pI: Translated: 11.82; Mature: 11.82

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLDPRRLQSFREVALAGRISVAARTLHLSPSALSEQVRELERTCGRPLLLRTAHGVQL
CCCCCHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHCCCCEEEEECCCEEE
TADGQRLLEHAQRVDEALRAAEASMDREAEEGGPLVLGASQTTAAWVVPHLVAELRRARP
ECCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCC
GVAVRVEVGNTDAVLGWLAKGTVPLGLVEGLSRAPHVRLEPFARDEIVAAASSAAPAEIL
CEEEEEEECCCHHHHHHHHCCCCCHHHHHHHCCCCCCEECCCCHHHHHHHHCCCCHHHHH
RLRRVAELDRVPIVWREVGSGTRAVVEKALRRAGVRRTRRHADLELGTNDAVKAAVQLGL
HHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
GVGFLSRWAIRTELATGALRAIPLEGLRIERAFSWALPAGGVSGIAGRFLREAQRLAAGT
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
VRPAWFP
CCCCCCC
>Mature Secondary Structure 
PRLDPRRLQSFREVALAGRISVAARTLHLSPSALSEQVRELERTCGRPLLLRTAHGVQL
CCCCHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHCCCCEEEEECCCEEE
TADGQRLLEHAQRVDEALRAAEASMDREAEEGGPLVLGASQTTAAWVVPHLVAELRRARP
ECCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCC
GVAVRVEVGNTDAVLGWLAKGTVPLGLVEGLSRAPHVRLEPFARDEIVAAASSAAPAEIL
CEEEEEEECCCHHHHHHHHCCCCCHHHHHHHCCCCCCEECCCCHHHHHHHHCCCCHHHHH
RLRRVAELDRVPIVWREVGSGTRAVVEKALRRAGVRRTRRHADLELGTNDAVKAAVQLGL
HHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
GVGFLSRWAIRTELATGALRAIPLEGLRIERAFSWALPAGGVSGIAGRFLREAQRLAAGT
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
VRPAWFP
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA