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The map label for this gene is cspA [H]

Identifier: 220915394

GI number: 220915394

Start: 307028

End: 307231

Strand: Reverse

Name: cspA [H]

Synonym: A2cp1_0273

Alternate gene names: 220915394

Gene position: 307231-307028 (Counterclockwise)

Preceding gene: 220915395

Following gene: 220915393

Centisome position: 6.11

GC content: 64.22

Gene sequence:

>204_bases
ATGGCGACCGGTACCGTGAAGTGGTTCAACGACGCGAAGGGCTTCGGCTTCATCACGCAGGACGACGGTGGTGAGGACGT
CTTCTGCCACTACAGCGCGATCTCGGGCGACGGCTTCAAGAGCCTCGCCGAGGGGCAGAAGGTGGAGTTCGACGTGGTCA
AGGGGCCGAAGGGCCTCCAGGCCGCGAACGTCCGCAAGGTGTAG

Upstream 100 bases:

>100_bases
ACGGGCGAATCAATTTCGGATACAGAAAATTTCGTCCACCGTCTGCTCGGTTGGATCGAACGTCATCCCCGGCGGGTCGA
ATCGAAGAAAAGAGAAGTGC

Downstream 100 bases:

>100_bases
TCGGACGCACCCTCGCGGCGAACGGGCCCGGTCTCCTCGGCAGAGGGGCCGGGCCCGCGCCGTCTCGGGCGGCGGCGTCG
CGCCGGGCGGGCGCGCGCCG

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MATGTVKWFNDAKGFGFITQDDGGEDVFCHYSAISGDGFKSLAEGQKVEFDVVKGPKGLQAANVRKV

Sequences:

>Translated_67_residues
MATGTVKWFNDAKGFGFITQDDGGEDVFCHYSAISGDGFKSLAEGQKVEFDVVKGPKGLQAANVRKV
>Mature_66_residues
ATGTVKWFNDAKGFGFITQDDGGEDVFCHYSAISGDGFKSLAEGQKVEFDVVKGPKGLQAANVRKV

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586882, Length=65, Percent_Identity=52.3076923076923, Blast_Score=70, Evalue=5e-13,
Organism=Homo sapiens, GI34098946, Length=65, Percent_Identity=52.3076923076923, Blast_Score=69, Evalue=6e-13,
Organism=Homo sapiens, GI224586884, Length=65, Percent_Identity=52.3076923076923, Blast_Score=69, Evalue=8e-13,
Organism=Homo sapiens, GI156415990, Length=65, Percent_Identity=50.7692307692308, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=65.5737704918033, Blast_Score=90, Evalue=4e-20,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=62.5, Blast_Score=86, Evalue=6e-19,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=58.2089552238806, Blast_Score=86, Evalue=6e-19,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=63.0769230769231, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI2367114, Length=62, Percent_Identity=59.6774193548387, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1787834, Length=62, Percent_Identity=59.6774193548387, Blast_Score=79, Evalue=4e-17,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=59.6774193548387, Blast_Score=77, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17533635, Length=65, Percent_Identity=47.6923076923077, Blast_Score=65, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=50.8196721311475, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24663131, Length=66, Percent_Identity=56.0606060606061, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7171; Mature: 7040

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGTVKWFNDAKGFGFITQDDGGEDVFCHYSAISGDGFKSLAEGQKVEFDVVKGPKGLQ
CCCCCEEECCCCCCCEEEECCCCCCEEEEEEEEECCCCCCHHCCCCEEEEEEECCCCCCC
AANVRKV
CCCEECC
>Mature Secondary Structure 
ATGTVKWFNDAKGFGFITQDDGGEDVFCHYSAISGDGFKSLAEGQKVEFDVVKGPKGLQ
CCCCEEECCCCCCCEEEECCCCCCEEEEEEEEECCCCCCHHCCCCEEEEEEECCCCCCC
AANVRKV
CCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA