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The map label for this gene is xerD [H]

Identifier: 220905498

GI number: 220905498

Start: 2696622

End: 2697644

Strand: Reverse

Name: xerD [H]

Synonym: Ddes_2236

Alternate gene names: 220905498

Gene position: 2697644-2696622 (Counterclockwise)

Preceding gene: 220905499

Following gene: 220905495

Centisome position: 93.88

GC content: 45.75

Gene sequence:

>1023_bases
ATGGCTGTTAACCAAACCAAGTCTGGCAGATGGTACGTTCAGTACCGAGTGCCGGGGCTTTCTAGCCCTAAAAAGGATTA
TTTGGGGAATAATCCAGATGCACAAGAGCAGGCTTTGAAACGACAAGCAGAAATAGCGACTGGACATATATACACGGTGG
CTGCACTTTCGAATTTTCGGCAGATATACCTTGACGATTTAGGACAATGCTACCTTGATTTTCTCAAAATCAAGGACAAG
ACAACTTCTTGGATTGGCACTCTCAAGTATTTATTAAATGAACATTTTCTTCCGGTGCTTTGCCATTCTCCTGTTGACCA
GATATCCTTCACGGATATTTTAAAAGTGGCGGCGAGGTTCGCAGATAAGTCCGCCGCCACCCAAAATCGTTATATGGATA
GCCTACATGTAATATTCCGGTTTGGCATACGCCATGAACTGACCACCAATGACCCTATGGCTCATTGGCAAAAGAAACGT
GAGCCGCAGCGTAACATGTTATTGACGATCAAAGACCTTGCAAAAATCTATGCAGCAGCTCCCGACCATTTGAAATGGAT
TATTGAAGTTGAATGGGCCTTGGGTACTCGCCCTGGGAAGTCAGAATTATTTTCTCTATGCTGGCAAGATGTTGATTTTG
ACAACAATTTCATTCGAGTTAGAGGGACCAAGACAAAAGGGTCAGACCGGATCATTCCGCTCACACCTGAATTTAAAGCC
CGCCTTCTGGACAAGCGCGATGTGGCCCAAAGTCCGTACATTATTGAAGTTAATGGACGAGGAATCCAGCATTGTCGGAG
GGCATTCAAAACCGCCCTTGAAAAAGCCAAGATTGACTACCCCGTAAGGCTCTATGACATCCGACACCTTTTCGCTTCAA
CAATGCTTGCTAATGGCGGCGACCTCAAGGCCGTTTCCAAACTCCTTGGGCATAGCTCCACCAGAATGACGGCAGATACC
TATTACCATGAACTCCAAGGAGAAAAGGAAAGGGCCTTGAGTGCCAAGCCTCAGCTATTTTAG

Upstream 100 bases:

>100_bases
ATAGAATTAGAGTTCTTGATCTTGAAGCATGGATGAAAAACCCAGAAGTATTTACCAATATTGAATCTGAAACCCGTTCA
GGCTTTAGGAGGATTGTTTA

Downstream 100 bases:

>100_bases
CTGTGAATATCTCACGTTATGCCGCGCCAGAAGTGTTGGAGCCAAAGATCTGCCCAAACTCCTCCGCGAATTGTTTATCT
TTATACATATGATATGCCGT

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MAVNQTKSGRWYVQYRVPGLSSPKKDYLGNNPDAQEQALKRQAEIATGHIYTVAALSNFRQIYLDDLGQCYLDFLKIKDK
TTSWIGTLKYLLNEHFLPVLCHSPVDQISFTDILKVAARFADKSAATQNRYMDSLHVIFRFGIRHELTTNDPMAHWQKKR
EPQRNMLLTIKDLAKIYAAAPDHLKWIIEVEWALGTRPGKSELFSLCWQDVDFDNNFIRVRGTKTKGSDRIIPLTPEFKA
RLLDKRDVAQSPYIIEVNGRGIQHCRRAFKTALEKAKIDYPVRLYDIRHLFASTMLANGGDLKAVSKLLGHSSTRMTADT
YYHELQGEKERALSAKPQLF

Sequences:

>Translated_340_residues
MAVNQTKSGRWYVQYRVPGLSSPKKDYLGNNPDAQEQALKRQAEIATGHIYTVAALSNFRQIYLDDLGQCYLDFLKIKDK
TTSWIGTLKYLLNEHFLPVLCHSPVDQISFTDILKVAARFADKSAATQNRYMDSLHVIFRFGIRHELTTNDPMAHWQKKR
EPQRNMLLTIKDLAKIYAAAPDHLKWIIEVEWALGTRPGKSELFSLCWQDVDFDNNFIRVRGTKTKGSDRIIPLTPEFKA
RLLDKRDVAQSPYIIEVNGRGIQHCRRAFKTALEKAKIDYPVRLYDIRHLFASTMLANGGDLKAVSKLLGHSSTRMTADT
YYHELQGEKERALSAKPQLF
>Mature_339_residues
AVNQTKSGRWYVQYRVPGLSSPKKDYLGNNPDAQEQALKRQAEIATGHIYTVAALSNFRQIYLDDLGQCYLDFLKIKDKT
TSWIGTLKYLLNEHFLPVLCHSPVDQISFTDILKVAARFADKSAATQNRYMDSLHVIFRFGIRHELTTNDPMAHWQKKRE
PQRNMLLTIKDLAKIYAAAPDHLKWIIEVEWALGTRPGKSELFSLCWQDVDFDNNFIRVRGTKTKGSDRIIPLTPEFKAR
LLDKRDVAQSPYIIEVNGRGIQHCRRAFKTALEKAKIDYPVRLYDIRHLFASTMLANGGDLKAVSKLLGHSSTRMTADTY
YHELQGEKERALSAKPQLF

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 39033; Mature: 38902

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVNQTKSGRWYVQYRVPGLSSPKKDYLGNNPDAQEQALKRQAEIATGHIYTVAALSNFR
CCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHH
QIYLDDLGQCYLDFLKIKDKTTSWIGTLKYLLNEHFLPVLCHSPVDQISFTDILKVAARF
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHH
ADKSAATQNRYMDSLHVIFRFGIRHELTTNDPMAHWQKKREPQRNMLLTIKDLAKIYAAA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHEEEHHHHHHHHHCC
PDHLKWIIEVEWALGTRPGKSELFSLCWQDVDFDNNFIRVRGTKTKGSDRIIPLTPEFKA
CCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEECCHHHHH
RLLDKRDVAQSPYIIEVNGRGIQHCRRAFKTALEKAKIDYPVRLYDIRHLFASTMLANGG
HHHCHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
DLKAVSKLLGHSSTRMTADTYYHELQGEKERALSAKPQLF
CHHHHHHHHCCCCCCEEHHHHHHHHCCCHHHHHCCCCCCC
>Mature Secondary Structure 
AVNQTKSGRWYVQYRVPGLSSPKKDYLGNNPDAQEQALKRQAEIATGHIYTVAALSNFR
CCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHH
QIYLDDLGQCYLDFLKIKDKTTSWIGTLKYLLNEHFLPVLCHSPVDQISFTDILKVAARF
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHH
ADKSAATQNRYMDSLHVIFRFGIRHELTTNDPMAHWQKKREPQRNMLLTIKDLAKIYAAA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHEEEHHHHHHHHHCC
PDHLKWIIEVEWALGTRPGKSELFSLCWQDVDFDNNFIRVRGTKTKGSDRIIPLTPEFKA
CCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEECCHHHHH
RLLDKRDVAQSPYIIEVNGRGIQHCRRAFKTALEKAKIDYPVRLYDIRHLFASTMLANGG
HHHCHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
DLKAVSKLLGHSSTRMTADTYYHELQGEKERALSAKPQLF
CHHHHHHHHCCCCCCEEHHHHHHHHCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]