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The map label for this gene is ygaD [C]

Identifier: 220904734

GI number: 220904734

Start: 1756312

End: 1757589

Strand: Reverse

Name: ygaD [C]

Synonym: Ddes_1466

Alternate gene names: 220904734

Gene position: 1757589-1756312 (Counterclockwise)

Preceding gene: 220904751

Following gene: 220904730

Centisome position: 61.17

GC content: 61.58

Gene sequence:

>1278_bases
ATGAGGGCGGAAATTATTTCAGTAGGTACGGAACTTCTGCTGGGGCACACTATCAATACGGATGCGGCTCATGTGGGCAG
GGCGCTTTCGGCTCTGGGTATGGATCTTTTGCAGGTTCATACTGTGGGGGATAACGCCGGACGGCTTGAGGCGGCTCTGC
GCGAGGCCCTGAACTGTGCGGATGTGGTCATCACCACAGGCGGGCTGGGACCCACTGATGACGATATGACCAAGGAAACT
GTCGCCAGGGTTCTGGGCGCGCCCCTGGAAGAACACAAGGACAGTCTGCGGCGCTTGCGCGAATATTTTGGTTCTCGCCC
CATTGCGGCAAATCAGCTCAAGCAGGCGTGGTTGCCGCGCGGTTCAACGGCTTTTCCCAACAGGGCGGGGACTGCCCCCG
GCTGTGCTGTGCCGGGAAAGCCGGGGCAGTGGGTGATTTTACTGCCCGGACCGCCCTCCGAGTTGCTGCCCATGCTCGAA
GATAGTGTGATGCCTTTTTTGCAGCGCATGGGGGGCGCGGTCATCGCCTCATTTATGGTGCGCACGTTTGGCATTGGCGA
AGGTTCTGCGGCTTTGCGCATAGCCGATCTGACGGAAGGGGCCAACCCTACGGTAGCCCCTTACGCCAGTGATGCGGAAA
TGTTCGTGCGGGTAACGGCAAAGGCCGAAAATGCTGAAGCTGCCGAGGCCCTGGCAAAGCCGGTTGTGGATGCTGTGCGC
GGCCGTCTGGGCGACGTGGTTTATGGCGTTAATGTGTCCGGCCTCGAAGCCGTGGTGGTTGAGCAACTGCGTCAACACCG
GCGAAGTCTCGCTATCGCGGAATCCTGCACGGGCGGCCTGCTGGCGAAGCGCATAACGGATCAGCCGGGCGCTTCGGAAG
TCTTTGGCTATGGCCTGATCACCTATGCCAATGAAGCAAAGACACGCCTTCTGGGTGTGCCGGAAGAGCAGCTTGCCTGC
TATGGGGCCGTGAGTCCGCAGGTCGCCCGCAGTATGGCTGTGGGCGTGCGTGAGCGTTACGGGGCGGATTATGGTCTGGG
CATTACCGGAGTGGCAGGTCCCGGCGGTGGCACGGAAGAAAAGCCCGTAGGGCTTGTGTATGTGGCGTTGAGTTGCAGTA
ATGCGGTATGGCTGCGTGTGCTGCGGCCCCAGGGGCGTTACCTTGGGCGGGAGTGGACCCGGCGGCTGGCTTCCAGTCAT
GCGCTGGACATGCTGCGAAGGCATATGGCGGGTCTGCCTGTGGAGGCCGGATGGGCGGACGGGCTGCCGCAGGACTGA

Upstream 100 bases:

>100_bases
AGCCGGCGCATACGTACAGTCTTGCAGGGTGGACAGGCGCGAGCTACGATCTTCACCTGCCTTGAGGGGCGGATACGTCG
TGAGTTTATAAGGAGGCCGC

Downstream 100 bases:

>100_bases
GTTTTTCGGCGGCCTGAATGGCAGCGGAAAATAAAAGCGGGGCTGCAGGTCGCCGCACCTTGAGGCGGGTGCAGGGCTGT
TTGTTTTTTATTTCGCAACC

Product: competence/damage-inducible protein CinA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MRAEIISVGTELLLGHTINTDAAHVGRALSALGMDLLQVHTVGDNAGRLEAALREALNCADVVITTGGLGPTDDDMTKET
VARVLGAPLEEHKDSLRRLREYFGSRPIAANQLKQAWLPRGSTAFPNRAGTAPGCAVPGKPGQWVILLPGPPSELLPMLE
DSVMPFLQRMGGAVIASFMVRTFGIGEGSAALRIADLTEGANPTVAPYASDAEMFVRVTAKAENAEAAEALAKPVVDAVR
GRLGDVVYGVNVSGLEAVVVEQLRQHRRSLAIAESCTGGLLAKRITDQPGASEVFGYGLITYANEAKTRLLGVPEEQLAC
YGAVSPQVARSMAVGVRERYGADYGLGITGVAGPGGGTEEKPVGLVYVALSCSNAVWLRVLRPQGRYLGREWTRRLASSH
ALDMLRRHMAGLPVEAGWADGLPQD

Sequences:

>Translated_425_residues
MRAEIISVGTELLLGHTINTDAAHVGRALSALGMDLLQVHTVGDNAGRLEAALREALNCADVVITTGGLGPTDDDMTKET
VARVLGAPLEEHKDSLRRLREYFGSRPIAANQLKQAWLPRGSTAFPNRAGTAPGCAVPGKPGQWVILLPGPPSELLPMLE
DSVMPFLQRMGGAVIASFMVRTFGIGEGSAALRIADLTEGANPTVAPYASDAEMFVRVTAKAENAEAAEALAKPVVDAVR
GRLGDVVYGVNVSGLEAVVVEQLRQHRRSLAIAESCTGGLLAKRITDQPGASEVFGYGLITYANEAKTRLLGVPEEQLAC
YGAVSPQVARSMAVGVRERYGADYGLGITGVAGPGGGTEEKPVGLVYVALSCSNAVWLRVLRPQGRYLGREWTRRLASSH
ALDMLRRHMAGLPVEAGWADGLPQD
>Mature_425_residues
MRAEIISVGTELLLGHTINTDAAHVGRALSALGMDLLQVHTVGDNAGRLEAALREALNCADVVITTGGLGPTDDDMTKET
VARVLGAPLEEHKDSLRRLREYFGSRPIAANQLKQAWLPRGSTAFPNRAGTAPGCAVPGKPGQWVILLPGPPSELLPMLE
DSVMPFLQRMGGAVIASFMVRTFGIGEGSAALRIADLTEGANPTVAPYASDAEMFVRVTAKAENAEAAEALAKPVVDAVR
GRLGDVVYGVNVSGLEAVVVEQLRQHRRSLAIAESCTGGLLAKRITDQPGASEVFGYGLITYANEAKTRLLGVPEEQLAC
YGAVSPQVARSMAVGVRERYGADYGLGITGVAGPGGGTEEKPVGLVYVALSCSNAVWLRVLRPQGRYLGREWTRRLASSH
ALDMLRRHMAGLPVEAGWADGLPQD

Specific function: Unknown

COG id: COG1058

COG function: function code R; Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family

Homologues:

Organism=Homo sapiens, GI41872389, Length=90, Percent_Identity=40, Blast_Score=66, Evalue=7e-11,
Organism=Homo sapiens, GI41872403, Length=90, Percent_Identity=40, Blast_Score=65, Evalue=9e-11,
Organism=Homo sapiens, GI296434309, Length=90, Percent_Identity=40, Blast_Score=65, Evalue=1e-10,
Organism=Escherichia coli, GI1789052, Length=155, Percent_Identity=41.9354838709677, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1788583, Length=290, Percent_Identity=32.0689655172414, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787818, Length=146, Percent_Identity=32.8767123287671, Blast_Score=85, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CINAL_DESDA (B8J0U1)

Other databases:

- EMBL:   CP001358
- RefSeq:   YP_002480046.1
- ProteinModelPortal:   B8J0U1
- GeneID:   7285164
- GenomeReviews:   CP001358_GR
- KEGG:   dds:Ddes_1466
- HOGENOM:   HBG449871
- HAMAP:   MF_00226_B
- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR001453
- Gene3D:   G3DSA:3.40.980.10
- PIRSF:   PIRSF006728
- SMART:   SM00852
- TIGRFAMs:   TIGR00199
- TIGRFAMs:   TIGR00200

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth; SSF53218 MoCF_biosynth

EC number: NA

Molecular weight: Translated: 44932; Mature: 44932

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAEIISVGTELLLGHTINTDAAHVGRALSALGMDLLQVHTVGDNAGRLEAALREALNCA
CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHEEEECCCCCHHHHHHHHHHCCHH
DVVITTGGLGPTDDDMTKETVARVLGAPLEEHKDSLRRLREYFGSRPIAANQLKQAWLPR
HEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
GSTAFPNRAGTAPGCAVPGKPGQWVILLPGPPSELLPMLEDSVMPFLQRMGGAVIASFMV
CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTFGIGEGSAALRIADLTEGANPTVAPYASDAEMFVRVTAKAENAEAAEALAKPVVDAVR
HHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHH
GRLGDVVYGVNVSGLEAVVVEQLRQHRRSLAIAESCTGGLLAKRITDQPGASEVFGYGLI
HHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHE
TYANEAKTRLLGVPEEQLACYGAVSPQVARSMAVGVRERYGADYGLGITGVAGPGGGTEE
EECCCHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCC
KPVGLVYVALSCSNAVWLRVLRPQGRYLGREWTRRLASSHALDMLRRHMAGLPVEAGWAD
CCCEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GLPQD
CCCCC
>Mature Secondary Structure
MRAEIISVGTELLLGHTINTDAAHVGRALSALGMDLLQVHTVGDNAGRLEAALREALNCA
CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHEEEECCCCCHHHHHHHHHHCCHH
DVVITTGGLGPTDDDMTKETVARVLGAPLEEHKDSLRRLREYFGSRPIAANQLKQAWLPR
HEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
GSTAFPNRAGTAPGCAVPGKPGQWVILLPGPPSELLPMLEDSVMPFLQRMGGAVIASFMV
CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTFGIGEGSAALRIADLTEGANPTVAPYASDAEMFVRVTAKAENAEAAEALAKPVVDAVR
HHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHH
GRLGDVVYGVNVSGLEAVVVEQLRQHRRSLAIAESCTGGLLAKRITDQPGASEVFGYGLI
HHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHE
TYANEAKTRLLGVPEEQLACYGAVSPQVARSMAVGVRERYGADYGLGITGVAGPGGGTEE
EECCCHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCC
KPVGLVYVALSCSNAVWLRVLRPQGRYLGREWTRRLASSHALDMLRRHMAGLPVEAGWAD
CCCEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GLPQD
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA