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The map label for this gene is yibP [C]

Identifier: 220904459

GI number: 220904459

Start: 1401550

End: 1402875

Strand: Reverse

Name: yibP [C]

Synonym: Ddes_1189

Alternate gene names: 220904459

Gene position: 1402875-1401550 (Counterclockwise)

Preceding gene: 220904473

Following gene: 220904458

Centisome position: 48.82

GC content: 54.37

Gene sequence:

>1326_bases
ATGCGAAAAAAAAGTATGTTTTCATCAGTGTTGGGTATTTTGGTAGTCGTTGCTCTTGGCGTAGGCGGCTACACATTCTT
TAAGGACCTTGAAGGGCCTGTTATTGACGTTTCGCCCAACACCGGCAGAGTTTCCCCTGCCAGCGTGCTCAAGGTCAGCA
TGAAGGATCCTTCAGGAATTCGTTCTGTTACAGTTGGAGTCCGAAAGAATAACGTGCTCAATGTTATTTTCAACAAACAT
TTTGATCAATACCTGCCCGAACGCACTGTGGAGGTTCCCTTAAAGGACGCCAACCTGCGTGAGGGAGCCTTTGATCTTGA
GGTGCGCGCAACAGACGGCTCTCTGGCCGGTTTCGGGCAGGGCAACACCCGTACCGTGCAGCTTCCTATGCGCCTGGATA
CACAGCCCCCGCGCATATCCGTCAAAACCCTGCCCCCTAACGTCCGCCGTGGCGGTGCTGCAGTTGTGCGGTATACGGTT
GACGAAGACGTCACCAACAGCGGGGTGCTGGTAGCCGGTTATTTTGTGCCGGGCTACCTGCAAAAAGACGGCAGCTATAT
CTGCTTTTTCCCTTTTCCATACACTATGACCGCCAAGGACTACAAGAACAGCGTGGAGATTACAGCCACCGACCTGGCGG
GCAACGTCACCAAAAACCGTCTGACAGTTATGGCTTTTGAGCGTACCTTCAAGAGCGACAGCCTTGAACTGAGCGACGAC
TTTTTACTGAGTGTGGAAAACAAGCTGCGGCACCTTGCGCCGAATGCAGCCAACCCGCTGGAGTGCTACCTGTACATCAA
CAACCAGGTGCGCGCCGCCAACGTGGAAGATCTGCGCAATATCAGCAAGGATACGGCATCGGCCATGTTGTGGAGTGGCG
TTTTCCAGCGCATGCCCCGCTCTGCCCCGCGCGCCGGATACGCAGACCACCGCTTTTATAATTACCAGGGCAAGCTTGTG
GGCGAATCCTACCATCTGGGCTTTGACCTCGCCTCCGTTCGCAATGATGACGTGCCTGCCGCTAACAGCGGTCGCGTAAT
ATTCAGCGGAGACCTGGGCATTTACGGCAATATTGTGGTCATTGACCACGGCCTTGGACTCATGTCCCTCTACTCTCACC
TTAACGACTCAATGGTCAACGCGGGCGATGTGGTGCAAAAAGGCCAAACCATAGGGCATACGGGAACCACCGGCCTCGCT
TTCGGTGACCATCTGCACTTCGGCATAATGGTGGGCGGTGTTGAAGTGACCCCCCTCGAATGGCTTGATCCCAAATGGAT
ACGTGACAACATCACCAGCCGTCTCGAGGCGTCCATGGCCCAATAA

Upstream 100 bases:

>100_bases
CTCTGCGGCTTTAACGGAACGTTATAAAAGTTCCAGACTTTTCCTTGAAACTTGGCTTTCTTTATGCAAGGCTTTGACGG
AGTTTAATGAGGAGCCTGTA

Downstream 100 bases:

>100_bases
AAGTATCTGTGACAATGCTCACGCCGTGCCTTTTGCGCAGGGACCGGATTAACCGCCCTTGCAGAAGGCACGGCGTTTTT
TGTGGCAACCGGGGGCTTGT

Product: peptidase M23

Products: NA

Alternate protein names: Peptidase M; M24/M37 Family Peptidase; M23 Peptidase Domain Protein; Metalloendopeptidase; M23/M37 Family Endopeptidase; M23/M37 Family Peptidase; Membrane-Bound Metallopeptidase; Metalloendopeptidase-Like Membrane Protein; Zinc Metalloendopeptidase; Cytoplasmic Membrane Protein; M23/M37 Family Metalloendoprotease; Metalloendopeptidase Related Membrane Protein; Tyrosyl-TRNA Synthetase; Lipoprotein NlpD; Peptidoglycan-Specific Endopeptidase; M23 Peptidase Domain-Containing Protein; Metallopeptidase; Cell Wall Peptidase; M23 Family Metalloendopeptidase; Phage Protein; Cell Wall Endopeptidase; Metalloprotease YebA; Periplasmic Protein; Cell Wall Endopeptidase Family; Lipoprotein

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MRKKSMFSSVLGILVVVALGVGGYTFFKDLEGPVIDVSPNTGRVSPASVLKVSMKDPSGIRSVTVGVRKNNVLNVIFNKH
FDQYLPERTVEVPLKDANLREGAFDLEVRATDGSLAGFGQGNTRTVQLPMRLDTQPPRISVKTLPPNVRRGGAAVVRYTV
DEDVTNSGVLVAGYFVPGYLQKDGSYICFFPFPYTMTAKDYKNSVEITATDLAGNVTKNRLTVMAFERTFKSDSLELSDD
FLLSVENKLRHLAPNAANPLECYLYINNQVRAANVEDLRNISKDTASAMLWSGVFQRMPRSAPRAGYADHRFYNYQGKLV
GESYHLGFDLASVRNDDVPAANSGRVIFSGDLGIYGNIVVIDHGLGLMSLYSHLNDSMVNAGDVVQKGQTIGHTGTTGLA
FGDHLHFGIMVGGVEVTPLEWLDPKWIRDNITSRLEASMAQ

Sequences:

>Translated_441_residues
MRKKSMFSSVLGILVVVALGVGGYTFFKDLEGPVIDVSPNTGRVSPASVLKVSMKDPSGIRSVTVGVRKNNVLNVIFNKH
FDQYLPERTVEVPLKDANLREGAFDLEVRATDGSLAGFGQGNTRTVQLPMRLDTQPPRISVKTLPPNVRRGGAAVVRYTV
DEDVTNSGVLVAGYFVPGYLQKDGSYICFFPFPYTMTAKDYKNSVEITATDLAGNVTKNRLTVMAFERTFKSDSLELSDD
FLLSVENKLRHLAPNAANPLECYLYINNQVRAANVEDLRNISKDTASAMLWSGVFQRMPRSAPRAGYADHRFYNYQGKLV
GESYHLGFDLASVRNDDVPAANSGRVIFSGDLGIYGNIVVIDHGLGLMSLYSHLNDSMVNAGDVVQKGQTIGHTGTTGLA
FGDHLHFGIMVGGVEVTPLEWLDPKWIRDNITSRLEASMAQ
>Mature_441_residues
MRKKSMFSSVLGILVVVALGVGGYTFFKDLEGPVIDVSPNTGRVSPASVLKVSMKDPSGIRSVTVGVRKNNVLNVIFNKH
FDQYLPERTVEVPLKDANLREGAFDLEVRATDGSLAGFGQGNTRTVQLPMRLDTQPPRISVKTLPPNVRRGGAAVVRYTV
DEDVTNSGVLVAGYFVPGYLQKDGSYICFFPFPYTMTAKDYKNSVEITATDLAGNVTKNRLTVMAFERTFKSDSLELSDD
FLLSVENKLRHLAPNAANPLECYLYINNQVRAANVEDLRNISKDTASAMLWSGVFQRMPRSAPRAGYADHRFYNYQGKLV
GESYHLGFDLASVRNDDVPAANSGRVIFSGDLGIYGNIVVIDHGLGLMSLYSHLNDSMVNAGDVVQKGQTIGHTGTTGLA
FGDHLHFGIMVGGVEVTPLEWLDPKWIRDNITSRLEASMAQ

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082297, Length=111, Percent_Identity=35.1351351351351, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48326; Mature: 48326

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKSMFSSVLGILVVVALGVGGYTFFKDLEGPVIDVSPNTGRVSPASVLKVSMKDPSGI
CCHHHHHHHHHHHHHHHHHCCCCEEHHHCCCCCEEEECCCCCCCCCCCEEEEEECCCCCC
RSVTVGVRKNNVLNVIFNKHFDQYLPERTVEVPLKDANLREGAFDLEVRATDGSLAGFGQ
EEEEEEEECCCEEEEEEHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEECCCCEEECCC
GNTRTVQLPMRLDTQPPRISVKTLPPNVRRGGAAVVRYTVDEDVTNSGVLVAGYFVPGYL
CCCEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCEE
QKDGSYICFFPFPYTMTAKDYKNSVEITATDLAGNVTKNRLTVMAFERTFKSDSLELSDD
ECCCCEEEEECCCCEEEHHCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCH
FLLSVENKLRHLAPNAANPLECYLYINNQVRAANVEDLRNISKDTASAMLWSGVFQRMPR
HEEEHHHHHHHHCCCCCCCEEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCC
SAPRAGYADHRFYNYQGKLVGESYHLGFDLASVRNDDVPAANSGRVIFSGDLGIYGNIVV
CCCCCCCCCCEEEEECCEEECCEEECCEEEHHCCCCCCCCCCCCEEEEECCCCCEEEEEE
IDHGLGLMSLYSHLNDSMVNAGDVVQKGQTIGHTGTTGLAFGDHLHFGIMVGGVEVTPLE
EECCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCEECCCEEEEEEECCEEECCHH
WLDPKWIRDNITSRLEASMAQ
CCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRKKSMFSSVLGILVVVALGVGGYTFFKDLEGPVIDVSPNTGRVSPASVLKVSMKDPSGI
CCHHHHHHHHHHHHHHHHHCCCCEEHHHCCCCCEEEECCCCCCCCCCCEEEEEECCCCCC
RSVTVGVRKNNVLNVIFNKHFDQYLPERTVEVPLKDANLREGAFDLEVRATDGSLAGFGQ
EEEEEEEECCCEEEEEEHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEECCCCEEECCC
GNTRTVQLPMRLDTQPPRISVKTLPPNVRRGGAAVVRYTVDEDVTNSGVLVAGYFVPGYL
CCCEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCEE
QKDGSYICFFPFPYTMTAKDYKNSVEITATDLAGNVTKNRLTVMAFERTFKSDSLELSDD
ECCCCEEEEECCCCEEEHHCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCH
FLLSVENKLRHLAPNAANPLECYLYINNQVRAANVEDLRNISKDTASAMLWSGVFQRMPR
HEEEHHHHHHHHCCCCCCCEEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCC
SAPRAGYADHRFYNYQGKLVGESYHLGFDLASVRNDDVPAANSGRVIFSGDLGIYGNIVV
CCCCCCCCCCEEEEECCEEECCEEECCEEEHHCCCCCCCCCCCCEEEEECCCCCEEEEEE
IDHGLGLMSLYSHLNDSMVNAGDVVQKGQTIGHTGTTGLAFGDHLHFGIMVGGVEVTPLE
EECCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCEECCCEEEEEEECCEEECCHH
WLDPKWIRDNITSRLEASMAQ
CCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA