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The map label for this gene is ycaO [C]

Identifier: 220904274

GI number: 220904274

Start: 1170018

End: 1171760

Strand: Reverse

Name: ycaO [C]

Synonym: Ddes_1001

Alternate gene names: 220904274

Gene position: 1171760-1170018 (Counterclockwise)

Preceding gene: 220904275

Following gene: 220904272

Centisome position: 40.78

GC content: 60.01

Gene sequence:

>1743_bases
ATGAACACGCATCTTCCCCGCATACAGCTGGCCCCCTGTCCCAAGGGCTACACCCGTGATCTGGACAAAACCATGAGCCC
GCCGCAAACCATCGCCCGTGTGCGCCAGCGGCTGACAGTGGCCGACCTGGACATCCTTGCCAGCACCAGAAGGGTGGACG
TGGACCGGTTGGGCATTCCCGTTTTTCTCAGCATATGCGGGGCTGATGCCCGACGCATCATGCCCACGCGCAAGCAGATG
GGCAAAGGCTCGTCTCCTGAGCAGGCCGAAGCATCTGCCCTTATGGAGCTTATGGAGCGCTACGCATTTTTCAGCTTTTG
GCAGAAGCGGCCCCATATGGAACGGGCCACGTGGAGCGAAGCCGAAGAGCGCTTCGGCAGCGCCCTGATTCCGCTTGCCG
AAATGCTGCGCTCAGTCAATGAAGAACTTGATGAAAACAAGGCCCGCCGTGTACTTAACCTTATAAGCTGGAGCTTTTAC
CCGGCAACGCGCCTGCCCGATGAAACCACGGCATGGCTGCCGCTGGACTGGTTCAAGCTGCTGGGCGAATTCAACGGCAC
TTCTGCGGGTAACAGCCCTGAAGAATCTCTTCTTCAGGGGTTGAGCGAACTTATTGAGCGCCACGTATGCTGCCTTGTTG
ACCGTGATCGTTCGGGCACCCCCACCATTGATCCCACCACCTGCCAGGATCCGGTGCTTCGCCAGTTGACTGAAGCCTTT
GCCAAAGAAGGCGTCCATCTGGTGCTCAAGGATTTTTCCCTCGGCATGCCCCTGCCCACAGTGGCTGCCATCGCGTGGGA
TCCGGCCACCCTCGGGAAAAGTTCTGAAATCGTGTTTACTGCGGGTACGGCAGCGTCGCCAGCCAAGGCGGCCATCCGCG
CGGTAACCGAAGTTGCCCAGCTGGCTGGAGATTTTTGCACCAATGCCTGTTACGAGGCATCCGGCCTGCCCAAGTTCAAC
ACCCTTGAAGAGGCCGCATGGCTGCTTGACGGCCCCACCGTGAGCCTGGAAAGCCTGCCCACAGTAGAAAACAGCGATAT
CAGGCAGGAGCTGCTCGCCGCCCTTGAAGGCATTCGCCCGCTGACCATGTACGCGGTGGAAACCACCCATCCACACCTGG
GCATTCCGGCCCATTACAATATCATACCCGGCATGGCTTTCAGAGAGCGTGACCGCAACCAGAGCCTGGGGCTTTTTGTC
GGCCGCAAGCTGGTGGAAGAAGCTGACGCCCCTACCGCCCTCGAGGGCCTGCGTGTGCTTGAGCAATGCTACCCCGGTGC
GCATTTTCTCCCCTTTTTTCACGGCATGCTGGCCTTGCGGGCAGAAGACTGGGACAGCGCCCGCGCCTTTTTCGACCAGG
CCCTGCCCCTGCAGCCGGATACCGATGCCCAGGCTCTGGCAGCCTTTTACCTGGGATATACCGACACCCTTCAGGGGCAT
TGGGCCGAATCCATACCGGCCCTGGCCGAAGCTGTGAAACTGTGCCCTGACATGAAGGAATACGGCAATCTGCTTGGCGT
GGCGCGCTTTAAAACCGGCGATTACGCGGCAGCGGCAGAGGCCTTTGCCGCAGTCCTGCGCGTAGACAAGGGTTCGGCCA
TGGACCTCGCCAATCTGGGCCTGTGCGAAAAGTTTATGGGCAAGAATGAGGATGCCCGCCGCCATCTGACGGCGGCTCTG
GAGCTGGACCCCAACCTGGATTTTGCCCGTCAGCATCTGGCGCAGATGGACGCACAGGGGTAA

Upstream 100 bases:

>100_bases
AAACATTCAAGGTTACCGAAGGCCGCACTGGCGTCAAAACCAACGACGACAATGGCGAAGAGCAACGCCGCATATACAGT
ATTCTGATTCTGGAGCGCCC

Downstream 100 bases:

>100_bases
AAAACCTTTTTCAACAACCCTGTGTATAAAAAACTATGAACCTCGATCTGTTGCAATGAACGTGTGCTTTATGTGCGCAT
TCATTGCAAAAGGCCGAGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 580; Mature: 580

Protein sequence:

>580_residues
MNTHLPRIQLAPCPKGYTRDLDKTMSPPQTIARVRQRLTVADLDILASTRRVDVDRLGIPVFLSICGADARRIMPTRKQM
GKGSSPEQAEASALMELMERYAFFSFWQKRPHMERATWSEAEERFGSALIPLAEMLRSVNEELDENKARRVLNLISWSFY
PATRLPDETTAWLPLDWFKLLGEFNGTSAGNSPEESLLQGLSELIERHVCCLVDRDRSGTPTIDPTTCQDPVLRQLTEAF
AKEGVHLVLKDFSLGMPLPTVAAIAWDPATLGKSSEIVFTAGTAASPAKAAIRAVTEVAQLAGDFCTNACYEASGLPKFN
TLEEAAWLLDGPTVSLESLPTVENSDIRQELLAALEGIRPLTMYAVETTHPHLGIPAHYNIIPGMAFRERDRNQSLGLFV
GRKLVEEADAPTALEGLRVLEQCYPGAHFLPFFHGMLALRAEDWDSARAFFDQALPLQPDTDAQALAAFYLGYTDTLQGH
WAESIPALAEAVKLCPDMKEYGNLLGVARFKTGDYAAAAEAFAAVLRVDKGSAMDLANLGLCEKFMGKNEDARRHLTAAL
ELDPNLDFARQHLAQMDAQG

Sequences:

>Translated_580_residues
MNTHLPRIQLAPCPKGYTRDLDKTMSPPQTIARVRQRLTVADLDILASTRRVDVDRLGIPVFLSICGADARRIMPTRKQM
GKGSSPEQAEASALMELMERYAFFSFWQKRPHMERATWSEAEERFGSALIPLAEMLRSVNEELDENKARRVLNLISWSFY
PATRLPDETTAWLPLDWFKLLGEFNGTSAGNSPEESLLQGLSELIERHVCCLVDRDRSGTPTIDPTTCQDPVLRQLTEAF
AKEGVHLVLKDFSLGMPLPTVAAIAWDPATLGKSSEIVFTAGTAASPAKAAIRAVTEVAQLAGDFCTNACYEASGLPKFN
TLEEAAWLLDGPTVSLESLPTVENSDIRQELLAALEGIRPLTMYAVETTHPHLGIPAHYNIIPGMAFRERDRNQSLGLFV
GRKLVEEADAPTALEGLRVLEQCYPGAHFLPFFHGMLALRAEDWDSARAFFDQALPLQPDTDAQALAAFYLGYTDTLQGH
WAESIPALAEAVKLCPDMKEYGNLLGVARFKTGDYAAAAEAFAAVLRVDKGSAMDLANLGLCEKFMGKNEDARRHLTAAL
ELDPNLDFARQHLAQMDAQG
>Mature_580_residues
MNTHLPRIQLAPCPKGYTRDLDKTMSPPQTIARVRQRLTVADLDILASTRRVDVDRLGIPVFLSICGADARRIMPTRKQM
GKGSSPEQAEASALMELMERYAFFSFWQKRPHMERATWSEAEERFGSALIPLAEMLRSVNEELDENKARRVLNLISWSFY
PATRLPDETTAWLPLDWFKLLGEFNGTSAGNSPEESLLQGLSELIERHVCCLVDRDRSGTPTIDPTTCQDPVLRQLTEAF
AKEGVHLVLKDFSLGMPLPTVAAIAWDPATLGKSSEIVFTAGTAASPAKAAIRAVTEVAQLAGDFCTNACYEASGLPKFN
TLEEAAWLLDGPTVSLESLPTVENSDIRQELLAALEGIRPLTMYAVETTHPHLGIPAHYNIIPGMAFRERDRNQSLGLFV
GRKLVEEADAPTALEGLRVLEQCYPGAHFLPFFHGMLALRAEDWDSARAFFDQALPLQPDTDAQALAAFYLGYTDTLQGH
WAESIPALAEAVKLCPDMKEYGNLLGVARFKTGDYAAAAEAFAAVLRVDKGSAMDLANLGLCEKFMGKNEDARRHLTAAL
ELDPNLDFARQHLAQMDAQG

Specific function: Unknown

COG id: COG1944

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0142 family [H]

Homologues:

Organism=Escherichia coli, GI87081799, Length=341, Percent_Identity=26.099706744868, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017667
- InterPro:   IPR003776 [H]

Pfam domain/function: PF02624 YcaO [H]

EC number: NA

Molecular weight: Translated: 63933; Mature: 63933

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTHLPRIQLAPCPKGYTRDLDKTMSPPQTIARVRQRLTVADLDILASTRRVDVDRLGIP
CCCCCCCEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHH
VFLSICGADARRIMPTRKQMGKGSSPEQAEASALMELMERYAFFSFWQKRPHMERATWSE
HHHHHHCCCHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AEERFGSALIPLAEMLRSVNEELDENKARRVLNLISWSFYPATRLPDETTAWLPLDWFKL
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
LGEFNGTSAGNSPEESLLQGLSELIERHVCCLVDRDRSGTPTIDPTTCQDPVLRQLTEAF
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
AKEGVHLVLKDFSLGMPLPTVAAIAWDPATLGKSSEIVFTAGTAASPAKAAIRAVTEVAQ
HHCCCEEEEEHHCCCCCCHHHHHHCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
LAGDFCTNACYEASGLPKFNTLEEAAWLLDGPTVSLESLPTVENSDIRQELLAALEGIRP
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHHHHHHCCCC
LTMYAVETTHPHLGIPAHYNIIPGMAFRERDRNQSLGLFVGRKLVEEADAPTALEGLRVL
EEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
EQCYPGAHFLPFFHGMLALRAEDWDSARAFFDQALPLQPDTDAQALAAFYLGYTDTLQGH
HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHCCC
WAESIPALAEAVKLCPDMKEYGNLLGVARFKTGDYAAAAEAFAAVLRVDKGSAMDLANLG
HHHHHHHHHHHHHHCCCHHHHHHHHEEHEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHH
LCEKFMGKNEDARRHLTAALELDPNLDFARQHLAQMDAQG
HHHHHHCCCHHHHHHHHEEEEECCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNTHLPRIQLAPCPKGYTRDLDKTMSPPQTIARVRQRLTVADLDILASTRRVDVDRLGIP
CCCCCCCEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHH
VFLSICGADARRIMPTRKQMGKGSSPEQAEASALMELMERYAFFSFWQKRPHMERATWSE
HHHHHHCCCHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AEERFGSALIPLAEMLRSVNEELDENKARRVLNLISWSFYPATRLPDETTAWLPLDWFKL
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
LGEFNGTSAGNSPEESLLQGLSELIERHVCCLVDRDRSGTPTIDPTTCQDPVLRQLTEAF
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
AKEGVHLVLKDFSLGMPLPTVAAIAWDPATLGKSSEIVFTAGTAASPAKAAIRAVTEVAQ
HHCCCEEEEEHHCCCCCCHHHHHHCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
LAGDFCTNACYEASGLPKFNTLEEAAWLLDGPTVSLESLPTVENSDIRQELLAALEGIRP
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHHHHHHCCCC
LTMYAVETTHPHLGIPAHYNIIPGMAFRERDRNQSLGLFVGRKLVEEADAPTALEGLRVL
EEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
EQCYPGAHFLPFFHGMLALRAEDWDSARAFFDQALPLQPDTDAQALAAFYLGYTDTLQGH
HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHCCC
WAESIPALAEAVKLCPDMKEYGNLLGVARFKTGDYAAAAEAFAAVLRVDKGSAMDLANLG
HHHHHHHHHHHHHHCCCHHHHHHHHEEHEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHH
LCEKFMGKNEDARRHLTAALELDPNLDFARQHLAQMDAQG
HHHHHHCCCHHHHHHHHEEEEECCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]