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The map label for this gene is yddU [C]

Identifier: 219380070

GI number: 219380070

Start: 1239567

End: 1241402

Strand: Reverse

Name: yddU [C]

Synonym: Bcep18194_A4299

Alternate gene names: 219380070

Gene position: 1241402-1239567 (Counterclockwise)

Preceding gene: 78065773

Following gene: 78065770

Centisome position: 33.6

GC content: 69.28

Gene sequence:

>1836_bases
ATGGAAGCCAACAGGAAACAGACGTCACGCAAGGGCTCCTGGCGCAGCGCCTTGCATACGCTGCGCCGCTTCGCCTGGTC
GGGCGGCGCGCTGATGCCCGCGCGCGCCGGCGCGCCGCGACGCGACGACTCCGTGCGCAACTGGCTGGAACAGACGGTCG
GCACGGTGGATTTCCTCGCCCATGTCGACCGCGAACTGCGCTTTCTGTACGTGTCCGACGCGAGCCTGCGCTTCATCGGC
TACCACCGCGACTACCTGCACACGCTGACGCTGCGCGACCTGATCGCCGAACAGGATACCGCGGCACTCGAAGGCCTGCT
TGCACGCGCCGCGCGTTCCGGCCAGGTCGAGAAGGCGACGATGTGCATCGTCAAGTCGCTCACCTACCCGCTGGACGTCG
AGATCCGCGCGTTCAAGAGCCGCCACCACGGGGTCGACGGGTTCGCGATCGCGGCGTTCGACGTGTCGTCATGGCGCGCG
CTCGAGGCACGCCTGACGTACGAAATGCATCACGACCCGATGACGGGGCTCGGCAACCTGTCCGCGCTCGTGCCCGCGCT
GATGCGCGCGCAGCAGGCCGCCGACGGGGAAGGCACCTGCGCGGCGCTGCTGCTGCTCGACCTCGACGACTACCAGCGGA
TCAACCGCGCGCTCGGCTACGACGCGGGCGACACGCTGCTGCGCGAGACCGCGCAGCGGCTGAAGGCGCTCGTCACGCCG
AACGAGCAGCTCGCGCGCGTCGCGAGCGACAAGTTCGCGGTCGTGCTCGGCGCACCGGACCGCACGCAGGCCAGCAATGC
GGCGGACGCACTCGCGCGCCGGCTGCAGGCCGCGGTGCGCGAGCCCTACGTGTACCAGGGGCAGACCGTGCACCTGTCCG
CGAGCATCGGCATCGCGCTCTATCCGGACGAACGTGCACTGCCCCATCGCGCACAGCACCACAGCCCGCTGCTGCGCCGC
GCCGACCACGCGCTCTCGCAGGCGAAGGCGTCGGGCGGCAATGCGCTCGCGTTCCACGCGCCCGTCGACGATCCGGCCGA
CGCCGAACGGCTGAAGCTCGAGGCCGACCTGTACGACGGCGTGCGCAACGGCGAGTTTTCGCTCCATTTCCAGCCGATCA
CGCGCAGCCAGTCGGGCGCGGTGGTCGGTGTCGAGGCCCTGATCCGCTGGCGCCATCCGGTGCACGGCCTCGTGCCGCCG
GCGACGTTCATTCCGCTCGCCGAATCGATCGGCCTGATCAACTATCTCGGCAACTGGGTGCTCAAGGCCGCGTGCATGCA
GCTCGTCGCCTGGGACCGCCAGGGGCTTGCGCTGCAGTACGTGGCGGTCAACGTGTCGCCGCAGCAGTTCCGCGACCCGC
GCTTCACGCAGAGCGTGCGCGAGGCGATCACGCTGACGGGCATCGACCCGCGCCGCATCGTGCTCGAGATCACCGAAAGC
CTGCTGATGCACGATCCGGCGCAGGCGAAGGGGCTGCTCGAGGAACTGACCGATCTCGGCATCCGCTTCGCGATCGACGA
TTTCGGCACCGGCTATTCGAGCCTCGCGTATCTGCAGCGCTTCCCGCTCGCGAAGCTGAAGATCGACCGCAGTTTCGTCG
AGAACCTGCTGACCTCGCGCAACGACCGCGCGATCGTGTCGGCGGTGGTCGGCCTCGCGCAGACGCTCGATCTCGAGCTC
GTCGCGGAAGGCGTCGAGACCGAGGCGCAGCGCGAATTGCTGACCGAGATGGGCTGCAACCATATCCAGGGCTGGCTCGT
CTGCCAGGCGCTGCCGTCCGAGGAGCTCGCGCGGCGCTTCGAGGCGCAGCAACTGCACCTGCACGCCGCCGCCTGA

Upstream 100 bases:

>100_bases
AGCGGCCATGCCATCCGCGGCCAGTCCGTTAAAGATTCCGCACAGTCTGCCGTTATTCCTTCCGGACAACCGGTTCCAGC
CCTTCACGTCAGCGAGAAAC

Downstream 100 bases:

>100_bases
CGCGCGCGGCGAACCGGACAGATCCGTATGTCAATCACCGAACACCTGCCCCGCACCGCATTGCTCGACAAGCTGTGGGC
CCGGATGAACGAACGGGGCG

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 611; Mature: 611

Protein sequence:

>611_residues
MEANRKQTSRKGSWRSALHTLRRFAWSGGALMPARAGAPRRDDSVRNWLEQTVGTVDFLAHVDRELRFLYVSDASLRFIG
YHRDYLHTLTLRDLIAEQDTAALEGLLARAARSGQVEKATMCIVKSLTYPLDVEIRAFKSRHHGVDGFAIAAFDVSSWRA
LEARLTYEMHHDPMTGLGNLSALVPALMRAQQAADGEGTCAALLLLDLDDYQRINRALGYDAGDTLLRETAQRLKALVTP
NEQLARVASDKFAVVLGAPDRTQASNAADALARRLQAAVREPYVYQGQTVHLSASIGIALYPDERALPHRAQHHSPLLRR
ADHALSQAKASGGNALAFHAPVDDPADAERLKLEADLYDGVRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPP
ATFIPLAESIGLINYLGNWVLKAACMQLVAWDRQGLALQYVAVNVSPQQFRDPRFTQSVREAITLTGIDPRRIVLEITES
LLMHDPAQAKGLLEELTDLGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVENLLTSRNDRAIVSAVVGLAQTLDLEL
VAEGVETEAQRELLTEMGCNHIQGWLVCQALPSEELARRFEAQQLHLHAAA

Sequences:

>Translated_611_residues
MEANRKQTSRKGSWRSALHTLRRFAWSGGALMPARAGAPRRDDSVRNWLEQTVGTVDFLAHVDRELRFLYVSDASLRFIG
YHRDYLHTLTLRDLIAEQDTAALEGLLARAARSGQVEKATMCIVKSLTYPLDVEIRAFKSRHHGVDGFAIAAFDVSSWRA
LEARLTYEMHHDPMTGLGNLSALVPALMRAQQAADGEGTCAALLLLDLDDYQRINRALGYDAGDTLLRETAQRLKALVTP
NEQLARVASDKFAVVLGAPDRTQASNAADALARRLQAAVREPYVYQGQTVHLSASIGIALYPDERALPHRAQHHSPLLRR
ADHALSQAKASGGNALAFHAPVDDPADAERLKLEADLYDGVRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPP
ATFIPLAESIGLINYLGNWVLKAACMQLVAWDRQGLALQYVAVNVSPQQFRDPRFTQSVREAITLTGIDPRRIVLEITES
LLMHDPAQAKGLLEELTDLGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVENLLTSRNDRAIVSAVVGLAQTLDLEL
VAEGVETEAQRELLTEMGCNHIQGWLVCQALPSEELARRFEAQQLHLHAAA
>Mature_611_residues
MEANRKQTSRKGSWRSALHTLRRFAWSGGALMPARAGAPRRDDSVRNWLEQTVGTVDFLAHVDRELRFLYVSDASLRFIG
YHRDYLHTLTLRDLIAEQDTAALEGLLARAARSGQVEKATMCIVKSLTYPLDVEIRAFKSRHHGVDGFAIAAFDVSSWRA
LEARLTYEMHHDPMTGLGNLSALVPALMRAQQAADGEGTCAALLLLDLDDYQRINRALGYDAGDTLLRETAQRLKALVTP
NEQLARVASDKFAVVLGAPDRTQASNAADALARRLQAAVREPYVYQGQTVHLSASIGIALYPDERALPHRAQHHSPLLRR
ADHALSQAKASGGNALAFHAPVDDPADAERLKLEADLYDGVRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPP
ATFIPLAESIGLINYLGNWVLKAACMQLVAWDRQGLALQYVAVNVSPQQFRDPRFTQSVREAITLTGIDPRRIVLEITES
LLMHDPAQAKGLLEELTDLGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVENLLTSRNDRAIVSAVVGLAQTLDLEL
VAEGVETEAQRELLTEMGCNHIQGWLVCQALPSEELARRFEAQQLHLHAAA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=428, Percent_Identity=34.1121495327103, Blast_Score=259, Evalue=4e-70,
Organism=Escherichia coli, GI1787541, Length=448, Percent_Identity=32.3660714285714, Blast_Score=236, Evalue=5e-63,
Organism=Escherichia coli, GI226510982, Length=426, Percent_Identity=32.1596244131455, Blast_Score=186, Evalue=3e-48,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=35.5102040816327, Blast_Score=155, Evalue=5e-39,
Organism=Escherichia coli, GI1786507, Length=236, Percent_Identity=35.5932203389831, Blast_Score=150, Evalue=3e-37,
Organism=Escherichia coli, GI1788502, Length=256, Percent_Identity=34.765625, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI1790496, Length=237, Percent_Identity=32.9113924050633, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI87081980, Length=262, Percent_Identity=32.4427480916031, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI1788849, Length=244, Percent_Identity=31.9672131147541, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI1787055, Length=231, Percent_Identity=32.034632034632, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87081845, Length=248, Percent_Identity=32.6612903225806, Blast_Score=119, Evalue=7e-28,
Organism=Escherichia coli, GI87082096, Length=432, Percent_Identity=25, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1788381, Length=211, Percent_Identity=28.9099526066351, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787410, Length=258, Percent_Identity=24.031007751938, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI145693134, Length=171, Percent_Identity=27.4853801169591, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 67516; Mature: 67516

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEANRKQTSRKGSWRSALHTLRRFAWSGGALMPARAGAPRRDDSVRNWLEQTVGTVDFLA
CCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
HVDRELRFLYVSDASLRFIGYHRDYLHTLTLRDLIAEQDTAALEGLLARAARSGQVEKAT
HHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHH
MCIVKSLTYPLDVEIRAFKSRHHGVDGFAIAAFDVSSWRALEARLTYEMHHDPMTGLGNL
HHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHEEEEECCCCCCCCCHH
SALVPALMRAQQAADGEGTCAALLLLDLDDYQRINRALGYDAGDTLLRETAQRLKALVTP
HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
NEQLARVASDKFAVVLGAPDRTQASNAADALARRLQAAVREPYVYQGQTVHLSASIGIAL
CHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCEEEEEEECEEEE
YPDERALPHRAQHHSPLLRRADHALSQAKASGGNALAFHAPVDDPADAERLKLEADLYDG
CCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHEEEEHHHHCC
VRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPPATFIPLAESIGLINYLGNWV
CCCCCEEEEEEECCCCCCCCEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LKAACMQLVAWDRQGLALQYVAVNVSPQQFRDPRFTQSVREAITLTGIDPRRIVLEITES
HHHHHHHHHHHCCCCCEEEEEEEECCHHHHCCCHHHHHHHHHHEECCCCHHHHHHHHHHH
LLMHDPAQAKGLLEELTDLGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVENLLTSR
HHHCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
NDRAIVSAVVGLAQTLDLELVAEGVETEAQRELLTEMGCNHIQGWLVCQALPSEELARRF
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHCHHHEEECCCHHHHHHHH
EAQQLHLHAAA
HHHHHEEEECC
>Mature Secondary Structure
MEANRKQTSRKGSWRSALHTLRRFAWSGGALMPARAGAPRRDDSVRNWLEQTVGTVDFLA
CCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
HVDRELRFLYVSDASLRFIGYHRDYLHTLTLRDLIAEQDTAALEGLLARAARSGQVEKAT
HHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHH
MCIVKSLTYPLDVEIRAFKSRHHGVDGFAIAAFDVSSWRALEARLTYEMHHDPMTGLGNL
HHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHEEEEECCCCCCCCCHH
SALVPALMRAQQAADGEGTCAALLLLDLDDYQRINRALGYDAGDTLLRETAQRLKALVTP
HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
NEQLARVASDKFAVVLGAPDRTQASNAADALARRLQAAVREPYVYQGQTVHLSASIGIAL
CHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCEEEEEEECEEEE
YPDERALPHRAQHHSPLLRRADHALSQAKASGGNALAFHAPVDDPADAERLKLEADLYDG
CCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHEEEEHHHHCC
VRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPPATFIPLAESIGLINYLGNWV
CCCCCEEEEEEECCCCCCCCEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LKAACMQLVAWDRQGLALQYVAVNVSPQQFRDPRFTQSVREAITLTGIDPRRIVLEITES
HHHHHHHHHHHCCCCCEEEEEEEECCHHHHCCCHHHHHHHHHHEECCCCHHHHHHHHHHH
LLMHDPAQAKGLLEELTDLGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVENLLTSR
HHHCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
NDRAIVSAVVGLAQTLDLELVAEGVETEAQRELLTEMGCNHIQGWLVCQALPSEELARRF
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHCHHHEEECCCHHHHHHHH
EAQQLHLHAAA
HHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]