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The map label for this gene is ymdB [C]

Identifier: 21910392

GI number: 21910392

Start: 913469

End: 914251

Strand: Reverse

Name: ymdB [C]

Synonym: SpyM3_0856

Alternate gene names: 21910392

Gene position: 914251-913469 (Counterclockwise)

Preceding gene: 21910393

Following gene: 21910391

Centisome position: 48.11

GC content: 40.87

Gene sequence:

>783_bases
ATGATTGGTCTGTTGCAAACAGAGCAGCTTACTAGTTCTTGGGCCTGTCCCTTGCCTAATGCTTTAACAAAGCGACAAGA
CTTGTGGCGGGCGCTCATTAACCAGCGCCCTGCTTTGCCCTTATCAAAAGATTACTTGAATCTGGAAGATGCTTATCTAG
ATGATTGGCGTGCTTCTTTTGTTCCTGTATCAGTCAAGGATTGCCAAAAAACTAATTATACCAGTCTTTTTCTTTACCAT
GGGGATATTAGGTACCTTGCTGTGGATGCTATTGTCAACGCTGCTAATAGTGAGTTATTGGGATGTTTTATTCCTAACCA
TGGCTGTATTGATAATGCGATTCATACGTTTGCCGGAAGTCGTTTACGCTTAGCTTGTCAGGCAATCATGACTGAACAAG
GCCGTAAGGAAGCCATTGGACAAGCAAAGCTTACCAGTGCTTATCATCTACCAGCCTCTTATATTATTCATACCGTAGGG
CCAAGAATTACCAAAGGACACCACGTTTCTCCGATTCGAGCTGATTTGTTAGCACGTTGTTATCGTTCTAGTCTTGATTT
GGCGGTTAAAGCAGGATTGACTAGCCTAGCTTTTTGCTCTATTTCAACAGGAGAATTTGGCTTTCCTAAAAAAGAAGCCG
CTCAGATTGCTATTAAGACAGTTTTAAAATGGCAAGCAGAACATCCAGAATCTAAGACCTTAACTATCATTTTTAATACT
TTTACATCAGAAGACAAGGCCTTATACGACACTTATTTGCAAAAGGAGAATAACTGTGAGTAA

Upstream 100 bases:

>100_bases
GAAAAAGCTGAGGAAAATTGGATTGTTGTGCTAACAGATGTTGATCAAGCAGCTTTTGATGCCCTAGAAGATGCCTAGTT
CATTTGATTTATTAGGGGAA

Downstream 100 bases:

>100_bases
TTGGACAACCTATCCTCAGAAAAACCTCACCCAGGCAGAACAACTGGCCCAATTAATCAAAGAAGCAGATGCACTTGTAG
TTGGTATTGGAGCTGGCATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MIGLLQTEQLTSSWACPLPNALTKRQDLWRALINQRPALPLSKDYLNLEDAYLDDWRASFVPVSVKDCQKTNYTSLFLYH
GDIRYLAVDAIVNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLTSAYHLPASYIIHTVG
PRITKGHHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLKWQAEHPESKTLTIIFNT
FTSEDKALYDTYLQKENNCE

Sequences:

>Translated_260_residues
MIGLLQTEQLTSSWACPLPNALTKRQDLWRALINQRPALPLSKDYLNLEDAYLDDWRASFVPVSVKDCQKTNYTSLFLYH
GDIRYLAVDAIVNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLTSAYHLPASYIIHTVG
PRITKGHHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLKWQAEHPESKTLTIIFNT
FTSEDKALYDTYLQKENNCE
>Mature_260_residues
MIGLLQTEQLTSSWACPLPNALTKRQDLWRALINQRPALPLSKDYLNLEDAYLDDWRASFVPVSVKDCQKTNYTSLFLYH
GDIRYLAVDAIVNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLTSAYHLPASYIIHTVG
PRITKGHHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLKWQAEHPESKTLTIIFNT
FTSEDKALYDTYLQKENNCE

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=249, Percent_Identity=35.3413654618474, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI13569840, Length=228, Percent_Identity=38.5964912280702, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI207450721, Length=156, Percent_Identity=32.0512820512821, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI8923143, Length=156, Percent_Identity=32.0512820512821, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI154813199, Length=134, Percent_Identity=37.3134328358209, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI1787283, Length=187, Percent_Identity=38.5026737967914, Blast_Score=106, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17538214, Length=180, Percent_Identity=40.5555555555556, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24586353, Length=242, Percent_Identity=27.6859504132231, Blast_Score=72, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 28978; Mature: 28978

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGLLQTEQLTSSWACPLPNALTKRQDLWRALINQRPALPLSKDYLNLEDAYLDDWRASF
CCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCHHHCE
VPVSVKDCQKTNYTSLFLYHGDIRYLAVDAIVNAANSELLGCFIPNHGCIDNAIHTFAGS
EEEEHHHCCCCCCEEEEEEECCCCEEHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCC
RLRLACQAIMTEQGRKEAIGQAKLTSAYHLPASYIIHTVGPRITKGHHVSPIRADLLARC
HHHHHHHHHHHHCCHHHHHCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
YRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLKWQAEHPESKTLTIIFNT
HHHCCCHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
FTSEDKALYDTYLQKENNCE
CCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIGLLQTEQLTSSWACPLPNALTKRQDLWRALINQRPALPLSKDYLNLEDAYLDDWRASF
CCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCHHHCE
VPVSVKDCQKTNYTSLFLYHGDIRYLAVDAIVNAANSELLGCFIPNHGCIDNAIHTFAGS
EEEEHHHCCCCCCEEEEEEECCCCEEHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCC
RLRLACQAIMTEQGRKEAIGQAKLTSAYHLPASYIIHTVGPRITKGHHVSPIRADLLARC
HHHHHHHHHHHHCCHHHHHCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
YRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLKWQAEHPESKTLTIIFNT
HHHCCCHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
FTSEDKALYDTYLQKENNCE
CCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11917108 [H]