Definition | Streptococcus pyogenes MGAS315 chromosome, complete genome. |
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Accession | NC_004070 |
Length | 1,900,521 |
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The map label for this gene is gcdB [H]
Identifier: 21910361
GI number: 21910361
Start: 878425
End: 879555
Strand: Direct
Name: gcdB [H]
Synonym: SpyM3_0825
Alternate gene names: 21910361
Gene position: 878425-879555 (Clockwise)
Preceding gene: 21910360
Following gene: 21910365
Centisome position: 46.22
GC content: 43.15
Gene sequence:
>1131_bases ATGCTAGACGTACTCAATCAAATGGTCCAATCGTCAGGATTGGCTCATCTAACTGTTAACAATCTTATCATGATTTGCTT GGCCTGTTTCTTTTTATACCTTGGTATCAAAAAGGAATATGAGCCTTACCTTATGGTACCAATCGCCTTTGGGATTTTAC TCGTTAATTTGCCTATGGCGGGATTGATGGACCACCCTGCCAATGGTAATCCTGGTGGCCTTCTTTATTACCTATATAAG GGAACTAGCCTAGGGATTTACCCACCTTTAATTTTTCTTTGTTTGGGGACATCAACTGACTTTGGTCCCTTGATTGCCAA TCCTAAAACCATTTTACTAGGAGGCGCAGCACAAGTTGGGATTTTCTTAGCCTTTTTCCTTGCTATTATGTTAGGCATGA CACCTCAAGAAGCAGCTTCTGTCGGGATTATTGGTGGTGCCGATGGACCAACAGCTATTTATGTGACGACAAAGTTGGCG CCTGATTTACTCTCTACTATCGCCCTAGCAGCTTATTCTTACATGGCTCTGGTACCTATTATTCAACCTCCTATCATTAA ACTCTTGACTACCAAGGCGGAACGCCAAGTGAAAATGACTCAAGCAAGAACTGTTTCACAAAAAGAAAAAATCATTTTCC CGATTATGGTAACAATCTTTGTCAGCCTTTTGGTTCCAAGTGCTACAACCTTGGTTGGCTGTTTGATGCTGGGAAATCTG GTCAGAGAAATTAAAATTGTTCCTAAAATTGTAGAGAATCTCCAACAAGTGGTTATGTTTTGCATTACTATCATTTTAGG ATTAACCGTTGGTGCTAAGGCCAATGGAGATCTCTTTTTATCAGCCACAACCTTGAAAATTATTGCCCTTGGGCTAATCG CCTTTGCTGCTGGGACAGCAGGGGGTGTCTTGATGGGGAAGGTCATGTACTATTTATCTGGTAACAAAGTGAACCCTATG ATAGGAGCAGCAGGTGTTTCAGCTGTTCCGATGGCAGCGCGAGTGGTCCAAAAGGTCGGACAAGAAGAAGATCCAAGTAA TTTCTTACTCATGCACGCCATGGGGCCCAATGTAGCTGGCGTTATTGGCTCAGCCATTGCCTCAGGTGCCTTGCTGGCCT TCTTTGGCTAA
Upstream 100 bases:
>100_bases AATTCTAGCACCTGCAGATGGTCTGGTTTCAAAAATTCATGTTGTGGCTAACCAAACGGTCGAGTCTGAACAAGTTTTGA TTTCATTCTAGGAGGAAACC
Downstream 100 bases:
>100_bases TTGTGAAAAAGGATTAGTAAATTAATCTTAATAAATCATTATCAGGAGTTGGAAGCAATCTAGCTCCTTTTTTAGTAGAA AGCTCGAGTGATAAACTATT
Product: putative methylmalonyl-CoA decarboxylase beta-subunit
Products: NA
Alternate protein names: Carboxylyase [H]
Number of amino acids: Translated: 376; Mature: 376
Protein sequence:
>376_residues MLDVLNQMVQSSGLAHLTVNNLIMICLACFFLYLGIKKEYEPYLMVPIAFGILLVNLPMAGLMDHPANGNPGGLLYYLYK GTSLGIYPPLIFLCLGTSTDFGPLIANPKTILLGGAAQVGIFLAFFLAIMLGMTPQEAASVGIIGGADGPTAIYVTTKLA PDLLSTIALAAYSYMALVPIIQPPIIKLLTTKAERQVKMTQARTVSQKEKIIFPIMVTIFVSLLVPSATTLVGCLMLGNL VREIKIVPKIVENLQQVVMFCITIILGLTVGAKANGDLFLSATTLKIIALGLIAFAAGTAGGVLMGKVMYYLSGNKVNPM IGAAGVSAVPMAARVVQKVGQEEDPSNFLLMHAMGPNVAGVIGSAIASGALLAFFG
Sequences:
>Translated_376_residues MLDVLNQMVQSSGLAHLTVNNLIMICLACFFLYLGIKKEYEPYLMVPIAFGILLVNLPMAGLMDHPANGNPGGLLYYLYK GTSLGIYPPLIFLCLGTSTDFGPLIANPKTILLGGAAQVGIFLAFFLAIMLGMTPQEAASVGIIGGADGPTAIYVTTKLA PDLLSTIALAAYSYMALVPIIQPPIIKLLTTKAERQVKMTQARTVSQKEKIIFPIMVTIFVSLLVPSATTLVGCLMLGNL VREIKIVPKIVENLQQVVMFCITIILGLTVGAKANGDLFLSATTLKIIALGLIAFAAGTAGGVLMGKVMYYLSGNKVNPM IGAAGVSAVPMAARVVQKVGQEEDPSNFLLMHAMGPNVAGVIGSAIASGALLAFFG >Mature_376_residues MLDVLNQMVQSSGLAHLTVNNLIMICLACFFLYLGIKKEYEPYLMVPIAFGILLVNLPMAGLMDHPANGNPGGLLYYLYK GTSLGIYPPLIFLCLGTSTDFGPLIANPKTILLGGAAQVGIFLAFFLAIMLGMTPQEAASVGIIGGADGPTAIYVTTKLA PDLLSTIALAAYSYMALVPIIQPPIIKLLTTKAERQVKMTQARTVSQKEKIIFPIMVTIFVSLLVPSATTLVGCLMLGNL VREIKIVPKIVENLQQVVMFCITIILGLTVGAKANGDLFLSATTLKIIALGLIAFAAGTAGGVLMGKVMYYLSGNKVNPM IGAAGVSAVPMAARVVQKVGQEEDPSNFLLMHAMGPNVAGVIGSAIASGALLAFFG
Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]
COG id: COG1883
COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gcdB/mmdB/oadB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005661 [H]
Pfam domain/function: PF03977 OAD_beta [H]
EC number: =4.1.1.70 [H]
Molecular weight: Translated: 39525; Mature: 39525
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDVLNQMVQSSGLAHLTVNNLIMICLACFFLYLGIKKEYEPYLMVPIAFGILLVNLPMA CHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCCHH GLMDHPANGNPGGLLYYLYKGTSLGIYPPLIFLCLGTSTDFGPLIANPKTILLGGAAQVG HHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECHHHHH IFLAFFLAIMLGMTPQEAASVGIIGGADGPTAIYVTTKLAPDLLSTIALAAYSYMALVPI HHHHHHHHHHHCCCCHHHCCEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH IQPPIIKLLTTKAERQVKMTQARTVSQKEKIIFPIMVTIFVSLLVPSATTLVGCLMLGNL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH VREIKIVPKIVENLQQVVMFCITIILGLTVGAKANGDLFLSATTLKIIALGLIAFAAGTA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCC GGVLMGKVMYYLSGNKVNPMIGAAGVSAVPMAARVVQKVGQEEDPSNFLLMHAMGPNVAG CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHH VIGSAIASGALLAFFG HHHHHHHHCCHHEECC >Mature Secondary Structure MLDVLNQMVQSSGLAHLTVNNLIMICLACFFLYLGIKKEYEPYLMVPIAFGILLVNLPMA CHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCCHH GLMDHPANGNPGGLLYYLYKGTSLGIYPPLIFLCLGTSTDFGPLIANPKTILLGGAAQVG HHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECHHHHH IFLAFFLAIMLGMTPQEAASVGIIGGADGPTAIYVTTKLAPDLLSTIALAAYSYMALVPI HHHHHHHHHHHCCCCHHHCCEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH IQPPIIKLLTTKAERQVKMTQARTVSQKEKIIFPIMVTIFVSLLVPSATTLVGCLMLGNL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH VREIKIVPKIVENLQQVVMFCITIILGLTVGAKANGDLFLSATTLKIIALGLIAFAAGTA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCC GGVLMGKVMYYLSGNKVNPMIGAAGVSAVPMAARVVQKVGQEEDPSNFLLMHAMGPNVAG CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHH VIGSAIASGALLAFFG HHHHHHHHCCHHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 10027965 [H]