Definition | Streptococcus pyogenes MGAS315 chromosome, complete genome. |
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Accession | NC_004070 |
Length | 1,900,521 |
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The map label for this gene is glyA [H]
Identifier: 21910339
GI number: 21910339
Start: 853537
End: 854793
Strand: Direct
Name: glyA [H]
Synonym: SpyM3_0803
Alternate gene names: 21910339
Gene position: 853537-854793 (Clockwise)
Preceding gene: 21910338
Following gene: 21910340
Centisome position: 44.91
GC content: 42.4
Gene sequence:
>1257_bases ATGATTTTTGATAAAGGTAATGTTGAAGACTTTGATAAAGAGCTTTGGGATGCCATTCATGCTGAAGAAGAAAGACAAGA ACATCATATCGAATTGATTGCATCTGAAAACATGGTTTCAAAAGCTGTCATGGCAGCTCAAGGTTCTGTTTTAACCAATA AGTATGCAGAAGGCTATCCAGGTAATCGCTATTATGGTGGAACAGAATGTGTGGATATTGTCGAAACGCTTGCTATTGAA CGTGCTAAGAAACTTTTCGGTGCCGCATTTGCCAATGTTCAAGCCCATTCCGGAAGTCAAGCCAATGCAGCAGCTTATAT GGCCTTAATTGAGGCTGGTGATACCGTATTAGGAATGGATTTGGCTGCAGGTGGTCATCTCACGCATGGCTCTCCAGTAA ATTTTTCTGGAAAAACTTACCATTTTGTGGGTTATTCAGTAGATGCTGATACTGAAATGTTAAATTATGAGGCGATTTTA GAACAAGCAAAGGCGGTCCAGCCAAAGCTTATCGTTGCAGGGGCTTCGGCCTACTCTAGAAACATTGATTTTGAAAAGTT TCGTGCCATTGCTGATCACGTAGGTGCTTACTTAATGGTGGACATGGCTCACATCGCTGGCCTTGTAGCAGCAGGTGTGC ACCCGAGTCCTGTCCCTTATGCGCATATTGTGACATCAACAACCCATAAAACCTTACGTGGTCCTCGTGGAGGCTTGATA TTAACCAATGACGAAGCTCTTGCTAAAAAGATTAATTCGGCCGTTTTCCCTGGTTTACAAGGAGGACCTCTGGAACACGT GATTGCTGCCAAAGCGGTTGCCTTCAAAGAAGCCTTGGATCCAGCCTTTAAAGACTATGCACAAGCTATTATTGATAATA CTGCGGCTATGGCAGCAGTTTTTGCACAAGATGATCGTTTCCGTCTGATCTCAGGTGGTACAGATAATCATGTCTTTTTA GTAGATGTCACTAAGGTTATTGCTAATGGTAAACTAGCGCAAAATCTTCTGGATGAGGTTAATATTACCCTTAATAAAAA TGCCATTCCTTTTGAAACCTTGTCGCCATTTAATACCTCAGGTATTCGCATTGGTTGTGCTGCCATAACCAGCCGTGGTA TGGGTGTTAAAGAGAGTCAGACCATTGCCCGTCTTATCATCAAAGCCTTGGTTAATCATGATCAAGAAACTATTCTTGAA GAAGTCCGTCAGGAAGTGCGTCAGTTAACCGATGCCTTCCCACTCTATAAAAAGTAA
Upstream 100 bases:
>100_bases GCCAGTCATCGTAAAGAAGCGCATGCTTTTTACCGAAACCTCGACTATGCAGATGATAAAACACAATTACGATTCATCAA AAACTTACAAGGAGATGACA
Downstream 100 bases:
>100_bases GGAATCATGTTAGATAGTTATATAAAACGTATTGTCATTCATCAATTTTCTCCCAATGACACTGAGTTACTGTTATCAGA TCGTTTAGTGAGCATTACAC
Product: serine hydroxymethyltransferase
Products: NA
Alternate protein names: SHMT; Serine methylase [H]
Number of amino acids: Translated: 418; Mature: 418
Protein sequence:
>418_residues MIFDKGNVEDFDKELWDAIHAEEERQEHHIELIASENMVSKAVMAAQGSVLTNKYAEGYPGNRYYGGTECVDIVETLAIE RAKKLFGAAFANVQAHSGSQANAAAYMALIEAGDTVLGMDLAAGGHLTHGSPVNFSGKTYHFVGYSVDADTEMLNYEAIL EQAKAVQPKLIVAGASAYSRNIDFEKFRAIADHVGAYLMVDMAHIAGLVAAGVHPSPVPYAHIVTSTTHKTLRGPRGGLI LTNDEALAKKINSAVFPGLQGGPLEHVIAAKAVAFKEALDPAFKDYAQAIIDNTAAMAAVFAQDDRFRLISGGTDNHVFL VDVTKVIANGKLAQNLLDEVNITLNKNAIPFETLSPFNTSGIRIGCAAITSRGMGVKESQTIARLIIKALVNHDQETILE EVRQEVRQLTDAFPLYKK
Sequences:
>Translated_418_residues MIFDKGNVEDFDKELWDAIHAEEERQEHHIELIASENMVSKAVMAAQGSVLTNKYAEGYPGNRYYGGTECVDIVETLAIE RAKKLFGAAFANVQAHSGSQANAAAYMALIEAGDTVLGMDLAAGGHLTHGSPVNFSGKTYHFVGYSVDADTEMLNYEAIL EQAKAVQPKLIVAGASAYSRNIDFEKFRAIADHVGAYLMVDMAHIAGLVAAGVHPSPVPYAHIVTSTTHKTLRGPRGGLI LTNDEALAKKINSAVFPGLQGGPLEHVIAAKAVAFKEALDPAFKDYAQAIIDNTAAMAAVFAQDDRFRLISGGTDNHVFL VDVTKVIANGKLAQNLLDEVNITLNKNAIPFETLSPFNTSGIRIGCAAITSRGMGVKESQTIARLIIKALVNHDQETILE EVRQEVRQLTDAFPLYKK >Mature_418_residues MIFDKGNVEDFDKELWDAIHAEEERQEHHIELIASENMVSKAVMAAQGSVLTNKYAEGYPGNRYYGGTECVDIVETLAIE RAKKLFGAAFANVQAHSGSQANAAAYMALIEAGDTVLGMDLAAGGHLTHGSPVNFSGKTYHFVGYSVDADTEMLNYEAIL EQAKAVQPKLIVAGASAYSRNIDFEKFRAIADHVGAYLMVDMAHIAGLVAAGVHPSPVPYAHIVTSTTHKTLRGPRGGLI LTNDEALAKKINSAVFPGLQGGPLEHVIAAKAVAFKEALDPAFKDYAQAIIDNTAAMAAVFAQDDRFRLISGGTDNHVFL VDVTKVIANGKLAQNLLDEVNITLNKNAIPFETLSPFNTSGIRIGCAAITSRGMGVKESQTIARLIIKALVNHDQETILE EVRQEVRQLTDAFPLYKK
Specific function: Interconversion of serine and glycine [H]
COG id: COG0112
COG function: function code E; Glycine/serine hydroxymethyltransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the SHMT family [H]
Homologues:
Organism=Homo sapiens, GI19923315, Length=454, Percent_Identity=41.8502202643172, Blast_Score=325, Evalue=4e-89, Organism=Homo sapiens, GI261862352, Length=454, Percent_Identity=41.8502202643172, Blast_Score=325, Evalue=5e-89, Organism=Homo sapiens, GI261862350, Length=454, Percent_Identity=41.8502202643172, Blast_Score=325, Evalue=5e-89, Organism=Homo sapiens, GI261862348, Length=454, Percent_Identity=41.8502202643172, Blast_Score=325, Evalue=5e-89, Organism=Homo sapiens, GI261862346, Length=452, Percent_Identity=42.9203539823009, Blast_Score=316, Evalue=3e-86, Organism=Homo sapiens, GI22547186, Length=457, Percent_Identity=41.5754923413567, Blast_Score=314, Evalue=1e-85, Organism=Homo sapiens, GI22547189, Length=440, Percent_Identity=38.6363636363636, Blast_Score=277, Evalue=1e-74, Organism=Escherichia coli, GI1788902, Length=418, Percent_Identity=58.3732057416268, Blast_Score=461, Evalue=1e-131, Organism=Caenorhabditis elegans, GI25144732, Length=402, Percent_Identity=44.7761194029851, Blast_Score=331, Evalue=4e-91, Organism=Caenorhabditis elegans, GI25144729, Length=402, Percent_Identity=44.7761194029851, Blast_Score=330, Evalue=6e-91, Organism=Saccharomyces cerevisiae, GI6319739, Length=406, Percent_Identity=45.5665024630542, Blast_Score=346, Evalue=4e-96, Organism=Saccharomyces cerevisiae, GI6323087, Length=440, Percent_Identity=42.0454545454545, Blast_Score=317, Evalue=2e-87, Organism=Drosophila melanogaster, GI24640005, Length=449, Percent_Identity=41.6481069042316, Blast_Score=332, Evalue=4e-91, Organism=Drosophila melanogaster, GI221329721, Length=449, Percent_Identity=41.6481069042316, Blast_Score=330, Evalue=9e-91,
Paralogues:
None
Copy number: 3180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 12,000 Molecules/Cell In: Glucose minimal
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 - InterPro: IPR001085 - InterPro: IPR019798 [H]
Pfam domain/function: PF00464 SHMT [H]
EC number: =2.1.2.1 [H]
Molecular weight: Translated: 45080; Mature: 45080
Theoretical pI: Translated: 5.85; Mature: 5.85
Prosite motif: PS00096 SHMT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFDKGNVEDFDKELWDAIHAEEERQEHHIELIASENMVSKAVMAAQGSVLTNKYAEGYP CCCCCCCCCHHHHHHHHHHCCHHHHHHHHEEEEECCHHHHHHHHHHCCCHHHHHHHCCCC GNRYYGGTECVDIVETLAIERAKKLFGAAFANVQAHSGSQANAAAYMALIEAGDTVLGMD CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEE LAAGGHLTHGSPVNFSGKTYHFVGYSVDADTEMLNYEAILEQAKAVQPKLIVAGASAYSR ECCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHC NIDFEKFRAIADHVGAYLMVDMAHIAGLVAAGVHPSPVPYAHIVTSTTHKTLRGPRGGLI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHCCCCCCEE LTNDEALAKKINSAVFPGLQGGPLEHVIAAKAVAFKEALDPAFKDYAQAIIDNTAAMAAV EECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHH FAQDDRFRLISGGTDNHVFLVDVTKVIANGKLAQNLLDEVNITLNKNAIPFETLSPFNTS HCCCCCEEEEECCCCCEEEEEEHHHHHHCCHHHHHHHHHCCEEECCCCCCCCCCCCCCCC GIRIGCAAITSRGMGVKESQTIARLIIKALVNHDQETILEEVRQEVRQLTDAFPLYKK CEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MIFDKGNVEDFDKELWDAIHAEEERQEHHIELIASENMVSKAVMAAQGSVLTNKYAEGYP CCCCCCCCCHHHHHHHHHHCCHHHHHHHHEEEEECCHHHHHHHHHHCCCHHHHHHHCCCC GNRYYGGTECVDIVETLAIERAKKLFGAAFANVQAHSGSQANAAAYMALIEAGDTVLGMD CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEE LAAGGHLTHGSPVNFSGKTYHFVGYSVDADTEMLNYEAILEQAKAVQPKLIVAGASAYSR ECCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHC NIDFEKFRAIADHVGAYLMVDMAHIAGLVAAGVHPSPVPYAHIVTSTTHKTLRGPRGGLI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHCCCCCCEE LTNDEALAKKINSAVFPGLQGGPLEHVIAAKAVAFKEALDPAFKDYAQAIIDNTAAMAAV EECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHH FAQDDRFRLISGGTDNHVFLVDVTKVIANGKLAQNLLDEVNITLNKNAIPFETLSPFNTS HCCCCCEEEEECCCCCEEEEEEHHHHHHCCHHHHHHHHHCCEEECCCCCCCCCCCCCCCC GIRIGCAAITSRGMGVKESQTIARLIIKALVNHDQETILEEVRQEVRQLTDAFPLYKK CEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA