Definition | Streptococcus pyogenes MGAS315 chromosome, complete genome. |
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Accession | NC_004070 |
Length | 1,900,521 |
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The map label for this gene is trmE [H]
Identifier: 21910288
GI number: 21910288
Start: 807003
End: 808379
Strand: Reverse
Name: trmE [H]
Synonym: SpyM3_0752
Alternate gene names: 21910288
Gene position: 808379-807003 (Counterclockwise)
Preceding gene: 21910292
Following gene: 21910271
Centisome position: 42.53
GC content: 42.19
Gene sequence:
>1377_bases ATGAGTATAACTAAAGAATTTGATACAATTACCGCCATTTCAACCCCTCTTGGTGAAGGAGCTATTGGCATTGTTCGTTT ATCAGGGACAGATGCGCTTGCCATTGCACAATCTGTTTTTAAGGGAAAGAACTTAGAGCAAGTCGCCTCACACACCATTA ACTATGGCCATATCATTGATCCTAAGACAGGAACTATTATCGATGAAGTTATGGTGTCAGTCATGCTAGCCCCCAAAACC TTTACCCGTGAAAATGTGGTTGAAATCAATACGCACGGTGGTATTGCTGTGACAAATGAAATCTTGCAACTATTGATTCG CCAAGGCGCTAGAATGGCAGAGCCTGGCGAATTCACCAAACGTGCCTTCTTAAATGGGCGAGTTGATTTGACTCAAGCTG AGGCTGTCATGGACATTATTCGTGCCAAAACAGACAAGGCTATGACGATTGCAGTCAAGCAACTGGATGGCTCCCTTTCC CAGCTTATCAATGACACCCGTCAGGAAATTCTCAACACCTTAGCTCAAGTCGAAGTCAATATTGACTACCCTGAATACGA CGATGTGGAAGAAATGACCACTGCTCTGCTACGTGAGAAAACACAAGAATTCCAAAGCCTTTTGGAAAATCTCCTTCGAA CAGCTAAACGCGGTAAAATTCTTCGTGAGGGCTTATCAACAGCTATTATTGGTCGTCCAAACGTCGGTAAGTCAAGCTTA CTTAATAATTTGTTGCGAGAAGACAAGGCTATTGTGACTGATATTGCAGGAACCACCCGAGATGTCATTGAAGAATACGT TAATATCAAGGGAGTTCCTCTAAAACTTGTCGATACGGCCGGTATTCGTGAGACAGATGATCTGGTCGAACAAATCGGAG TTGAACGGTCTAAAAAAGCTCTTCAAGAAGCTGACCTTGTTCTTCTTGTGCTGAATGCTTCTGAAAAACTGACTGACCAA GACCGGGCTTTGTTAAATCTCAGTCAGGACAGTAACCGTATTATATTGTTGAATAAAACGGATTTGGAACAAAAGATTGA ATTAGAGCAATTACCAGATGACTACATTCCCATTTCCGTTTTAACCAACCAGAACATTAATCTAATCGAAGATCGTATCA ACCAGCTTTTCTTTGACAACGCTGGTTTGGTAGAGCAAGATGCCACTTACCTGTCAAATGCCCGTCACATTTCTTTGATT GAAAAGACAGTCCAGAGTTTAGAAGCTGTCAATGACGGTTTGGCGCTTGGCATGCCAGTTGATTTACTACAGGTTGATTT AACCAGAACTTGGGAAATTCTCGGAGAAATCACAGGGGATGCTGCTCCTGATGAACTCATTACCCAACTCTTTAGTCAAT TCTGTCTTGGTAAATAA
Upstream 100 bases:
>100_bases TATTTTTTTAGTATTAGCTAAACTCAAAATGGTGCTAGTCCTATTTTCTATACAAAATAATACCTTGCTTTCTACTAGGA CTTGATTTAAAATAGAGGGC
Downstream 100 bases:
>100_bases CAACAGTCTCTAATCATCACAAAAGAGCTGGAACAGTGTTCCAGCTCTTTTTGCTGTCATAAGCATCTTATTTAATTAAT TCGTAGATTGCTTCAACATA
Product: tRNA modification GTPase TrmE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 458; Mature: 457
Protein sequence:
>458_residues MSITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKNLEQVASHTINYGHIIDPKTGTIIDEVMVSVMLAPKT FTRENVVEINTHGGIAVTNEILQLLIRQGARMAEPGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLS QLINDTRQEILNTLAQVEVNIDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKALQEADLVLLVLNASEKLTDQ DRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISVLTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLI EKTVQSLEAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK
Sequences:
>Translated_458_residues MSITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKNLEQVASHTINYGHIIDPKTGTIIDEVMVSVMLAPKT FTRENVVEINTHGGIAVTNEILQLLIRQGARMAEPGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLS QLINDTRQEILNTLAQVEVNIDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKALQEADLVLLVLNASEKLTDQ DRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISVLTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLI EKTVQSLEAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK >Mature_457_residues SITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKNLEQVASHTINYGHIIDPKTGTIIDEVMVSVMLAPKTF TRENVVEINTHGGIAVTNEILQLLIRQGARMAEPGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQ LINDTRQEILNTLAQVEVNIDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSLL NNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKALQEADLVLLVLNASEKLTDQD RALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISVLTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIE KTVQSLEAVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK
Specific function: Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 [H]
COG id: COG0486
COG function: function code R; Predicted GTPase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI193082991, Length=467, Percent_Identity=32.9764453961456, Blast_Score=229, Evalue=4e-60, Organism=Homo sapiens, GI193082988, Length=499, Percent_Identity=31.4629258517034, Blast_Score=220, Evalue=2e-57, Organism=Homo sapiens, GI193082993, Length=457, Percent_Identity=32.1663019693654, Blast_Score=215, Evalue=7e-56, Organism=Escherichia coli, GI2367268, Length=462, Percent_Identity=33.3333333333333, Blast_Score=247, Evalue=1e-66, Organism=Escherichia coli, GI87082120, Length=126, Percent_Identity=42.0634920634921, Blast_Score=92, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17507259, Length=462, Percent_Identity=30.5194805194805, Blast_Score=196, Evalue=2e-50, Organism=Saccharomyces cerevisiae, GI6323665, Length=500, Percent_Identity=30.8, Blast_Score=188, Evalue=1e-48, Organism=Drosophila melanogaster, GI45550813, Length=474, Percent_Identity=29.535864978903, Blast_Score=199, Evalue=3e-51,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018948 - InterPro: IPR002917 - InterPro: IPR003661 - InterPro: IPR005225 - InterPro: IPR004520 [H]
Pfam domain/function: PF01926 MMR_HSR1; PF10396 TrmE_N [H]
EC number: NA
Molecular weight: Translated: 50568; Mature: 50436
Theoretical pI: Translated: 4.38; Mature: 4.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKNLEQVASHTINYGHIID CCCCCHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHCCCCCEEEC PKTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQGARMAEPGEFTK CCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHH RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN HHHHCCCCCHHHHHHHHHHHHHCCCCHHEEHHHHHCHHHHHHHHHHHHHHHHHHHHEEEE IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHH LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA HHHHHHHCHHHHHHHCCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCHHHHHH LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV HHHCCEEEEEECCCCCCCCHHHHHEEECCCCCEEEEEECCCCHHHHHHHHCCCCCCCEEE LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKTVQSLEAVNDGLALGMPV EECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCH DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure SITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKNLEQVASHTINYGHIID CCCCHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHCCCCCEEEC PKTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQGARMAEPGEFTK CCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHH RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN HHHHCCCCCHHHHHHHHHHHHHCCCCHHEEHHHHHCHHHHHHHHHHHHHHHHHHHHEEEE IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHH LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA HHHHHHHCHHHHHHHCCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCHHHHHH LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV HHHCCEEEEEECCCCCCCCHHHHHEEECCCCCEEEEEECCCCHHHHHHHHCCCCCCCEEE LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKTVQSLEAVNDGLALGMPV EECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCH DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11296296 [H]