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The map label for this gene is yoeC [H]

Identifier: 21910240

GI number: 21910240

Start: 762960

End: 763535

Strand: Direct

Name: yoeC [H]

Synonym: SpyM3_0704

Alternate gene names: 21910240

Gene position: 762960-763535 (Clockwise)

Preceding gene: 21910239

Following gene: 21910241

Centisome position: 40.14

GC content: 35.94

Gene sequence:

>576_bases
TTGAAGATAGTACAGCCAATCAGAGATACTGATCAGATTGATATGATGAAAGACTATTTGAAAGGTTGGAATCCAAGAAA
TTTTCTACTGTTACTGTTTGGATTAAATACTGGTTTGCGAATAGGTGATATTTTACCTCTCAAAGTTAAGGATGTCACTG
CTGGCAACTATATAGATATTATCGAGCAAAAGACAGGTAAGCAAAAACGGTTTCCAATTAATAAAACTCTCAGACGAGAG
ATAGATAAGTATATCAAAGATAAGCAATTAAAGCCTTGGGATTACTTATTCGAGAGCCAAAAAAAATGTACTGAGCCAGG
AAAAGAGGGCCAGAAGAAACCAATAAGTCGAGAGCAAGCATGGAAAATACTAAATAAGGCTGCTAAGCAATTTGGCATAC
ATCACATTGGAACACACAGCATGAGAAAATCATTTGGTTATCACATGTACCAAAAGACTCAAGATATAGCCATGCTGATG
GAGATGTTTAATCATTCTTCGCCAGATATAACTTTAAGATACATAGGTATCAACCAAGAACGGATAGATGATGCAGTGGC
TGATTTCAGCCTATAA

Upstream 100 bases:

>100_bases
AGAAGTAAGGAACTGTTGAAACGATTTGAATATCATTATTTCTGAGGAAAAGGCAAGGACAATCCGTTCTTGTCTTTTTG
TTTGTAGGAGGTGAGACAGC

Downstream 100 bases:

>100_bases
TATTTTTTTAGTTTTACTTAATAACACAAAACGAAAAAATGTTGCATTACCTTTTTAGGAATTTGACTGTGGCTCAGTAA
TCATAGTTGATTTAGTCGCT

Product: putative recombinase - phage associated

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MKIVQPIRDTDQIDMMKDYLKGWNPRNFLLLLFGLNTGLRIGDILPLKVKDVTAGNYIDIIEQKTGKQKRFPINKTLRRE
IDKYIKDKQLKPWDYLFESQKKCTEPGKEGQKKPISREQAWKILNKAAKQFGIHHIGTHSMRKSFGYHMYQKTQDIAMLM
EMFNHSSPDITLRYIGINQERIDDAVADFSL

Sequences:

>Translated_191_residues
MKIVQPIRDTDQIDMMKDYLKGWNPRNFLLLLFGLNTGLRIGDILPLKVKDVTAGNYIDIIEQKTGKQKRFPINKTLRRE
IDKYIKDKQLKPWDYLFESQKKCTEPGKEGQKKPISREQAWKILNKAAKQFGIHHIGTHSMRKSFGYHMYQKTQDIAMLM
EMFNHSSPDITLRYIGINQERIDDAVADFSL
>Mature_191_residues
MKIVQPIRDTDQIDMMKDYLKGWNPRNFLLLLFGLNTGLRIGDILPLKVKDVTAGNYIDIIEQKTGKQKRFPINKTLRRE
IDKYIKDKQLKPWDYLFESQKKCTEPGKEGQKKPISREQAWKILNKAAKQFGIHHIGTHSMRKSFGYHMYQKTQDIAMLM
EMFNHSSPDITLRYIGINQERIDDAVADFSL

Specific function: Fime Is One Of The 2 Regulatory Proteins Which Control The Phase Variation Of Type 1 Fimbriae In E. coli. These Proteins Mediate The Periodic Inversion Of A 300bp DNA Segment That Harbors The Promoter For The Fimbrial Structural Gene, Fima. Fime Switches

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 22403; Mature: 22403

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIVQPIRDTDQIDMMKDYLKGWNPRNFLLLLFGLNTGLRIGDILPLKVKDVTAGNYIDI
CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCEECCCCCEEEEECCCCCHHHH
IEQKTGKQKRFPINKTLRREIDKYIKDKQLKPWDYLFESQKKCTEPGKEGQKKPISREQA
HHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
WKILNKAAKQFGIHHIGTHSMRKSFGYHMYQKTQDIAMLMEMFNHSSPDITLRYIGINQE
HHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHH
RIDDAVADFSL
HHHHHHHHCCC
>Mature Secondary Structure
MKIVQPIRDTDQIDMMKDYLKGWNPRNFLLLLFGLNTGLRIGDILPLKVKDVTAGNYIDI
CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCEECCCCCEEEEECCCCCHHHH
IEQKTGKQKRFPINKTLRREIDKYIKDKQLKPWDYLFESQKKCTEPGKEGQKKPISREQA
HHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
WKILNKAAKQFGIHHIGTHSMRKSFGYHMYQKTQDIAMLMEMFNHSSPDITLRYIGINQE
HHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHH
RIDDAVADFSL
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]