Click here to switch to the map view.

The map label for this gene is ypfJ [H]

Identifier: 21910048

GI number: 21910048

Start: 561622

End: 562374

Strand: Reverse

Name: ypfJ [H]

Synonym: SpyM3_0512

Alternate gene names: 21910048

Gene position: 562374-561622 (Counterclockwise)

Preceding gene: 21910053

Following gene: 21910014

Centisome position: 29.59

GC content: 43.96

Gene sequence:

>753_bases
ATGGGAGGAGGTGGCCTATCTGGTGTTTTAGGAGGCAAGCCTTCTTCTACCAACAACAATGCCTATCAATCAAGCCAAGT
AACGCGTACAAATGGTGACAAGGCTAGTCAAGAACAGGTTTCTTTTGTCAGTAAGGTCTTCGCCTCTACCGAGGACTATT
GGACTAAGACATTTCGTGAGAAAGGGTTAACTTATCATAAACCAACATTAGTTCTATATACTGGAGCAACTCAAACCGCT
TGTGGCAGGGGGCAAGCCTCTTCTGGTCCTTTCTATTGCCCAGGCGATCAAAAAGTGTATTTAGATATTTCTTTTTATAA
TGAACTATCAACCAAGTACGGCGCAAAAGGTGATTTCGCTATGGCCTATGTGATTGCTCATGAAGTTGGCCACCACATCC
AAAATGAATTGGGAATTATGGATAATTACGCTAGCGCTAGACAAGGAAAATCAAAGGCTAAAGCCAATCAACTCAACGTC
AAGTTGGAATTACAAGCTGATTACTATGCTGGTGCCTGGGCTAATTATGTTCAAGGGCAAGGCCTTTTGGAAAAAGGAGA
CATTGAGGAGGCAATGGCAGCAGCTCACGCAGTTGGGGATGATACTCTGCAAGAAGAAACCTATGGCAGAACCGTTCCCG
ATAGTTTTACACATGGCACTTCTAAGCAACGCCAACGTTGGTTTGACCGAGGTTACCAATATGGCGACTTTGAGCATGGT
GATACCTTTAGCATCCCGTATAGTAAGCTTTAG

Upstream 100 bases:

>100_bases
CTTTTGGGGCGGCGGCCTAGGGGGCGGTCTCCTGCTTCAATTACTCTTTTCACGAGGAGGTTGGAAAACCAAGCTGGTTA
TTCTTCTCCTTCTCCTAGTT

Downstream 100 bases:

>100_bases
AGAAATGGTGACGTATTGATAATAGTCACACTTAGAAAAAAACCAAACAAGTGCTGTGCTTGTTTGGTTTTTTTCTTCTA
ATATCATAAACTCTTACCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MGGGGLSGVLGGKPSSTNNNAYQSSQVTRTNGDKASQEQVSFVSKVFASTEDYWTKTFREKGLTYHKPTLVLYTGATQTA
CGRGQASSGPFYCPGDQKVYLDISFYNELSTKYGAKGDFAMAYVIAHEVGHHIQNELGIMDNYASARQGKSKAKANQLNV
KLELQADYYAGAWANYVQGQGLLEKGDIEEAMAAAHAVGDDTLQEETYGRTVPDSFTHGTSKQRQRWFDRGYQYGDFEHG
DTFSIPYSKL

Sequences:

>Translated_250_residues
MGGGGLSGVLGGKPSSTNNNAYQSSQVTRTNGDKASQEQVSFVSKVFASTEDYWTKTFREKGLTYHKPTLVLYTGATQTA
CGRGQASSGPFYCPGDQKVYLDISFYNELSTKYGAKGDFAMAYVIAHEVGHHIQNELGIMDNYASARQGKSKAKANQLNV
KLELQADYYAGAWANYVQGQGLLEKGDIEEAMAAAHAVGDDTLQEETYGRTVPDSFTHGTSKQRQRWFDRGYQYGDFEHG
DTFSIPYSKL
>Mature_249_residues
GGGGLSGVLGGKPSSTNNNAYQSSQVTRTNGDKASQEQVSFVSKVFASTEDYWTKTFREKGLTYHKPTLVLYTGATQTAC
GRGQASSGPFYCPGDQKVYLDISFYNELSTKYGAKGDFAMAYVIAHEVGHHIQNELGIMDNYASARQGKSKAKANQLNVK
LELQADYYAGAWANYVQGQGLLEKGDIEEAMAAAHAVGDDTLQEETYGRTVPDSFTHGTSKQRQRWFDRGYQYGDFEHGD
TFSIPYSKL

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=241, Percent_Identity=49.792531120332, Blast_Score=252, Evalue=2e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 27434; Mature: 27303

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGGGLSGVLGGKPSSTNNNAYQSSQVTRTNGDKASQEQVSFVSKVFASTEDYWTKTFRE
CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
KGLTYHKPTLVLYTGATQTACGRGQASSGPFYCPGDQKVYLDISFYNELSTKYGAKGDFA
CCCEEECCEEEEEECCCCCCCCCCCCCCCCEECCCCCEEEEEEEEHHHHHHHCCCCCCHH
MAYVIAHEVGHHIQNELGIMDNYASARQGKSKAKANQLNVKLELQADYYAGAWANYVQGQ
HHHHHHHHHHHHHHHHHCCHHCHHHHHCCHHHHHHHHEEEEEEEECCCCCCHHHHHHCCC
GLLEKGDIEEAMAAAHAVGDDTLQEETYGRTVPDSFTHGTSKQRQRWFDRGYQYGDFEHG
CCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
DTFSIPYSKL
CEECCCCCCC
>Mature Secondary Structure 
GGGGLSGVLGGKPSSTNNNAYQSSQVTRTNGDKASQEQVSFVSKVFASTEDYWTKTFRE
CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
KGLTYHKPTLVLYTGATQTACGRGQASSGPFYCPGDQKVYLDISFYNELSTKYGAKGDFA
CCCEEECCEEEEEECCCCCCCCCCCCCCCCEECCCCCEEEEEEEEHHHHHHHCCCCCCHH
MAYVIAHEVGHHIQNELGIMDNYASARQGKSKAKANQLNVKLELQADYYAGAWANYVQGQ
HHHHHHHHHHHHHHHHHCCHHCHHHHHCCHHHHHHHHEEEEEEEECCCCCCHHHHHHCCC
GLLEKGDIEEAMAAAHAVGDDTLQEETYGRTVPDSFTHGTSKQRQRWFDRGYQYGDFEHG
CCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
DTFSIPYSKL
CEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]