Click here to switch to the map view.

The map label for this gene is ycgR [H]

Identifier: 21909943

GI number: 21909943

Start: 449066

End: 449968

Strand: Reverse

Name: ycgR [H]

Synonym: SpyM3_0407

Alternate gene names: 21909943

Gene position: 449968-449066 (Counterclockwise)

Preceding gene: 21909952

Following gene: 21909942

Centisome position: 23.68

GC content: 40.42

Gene sequence:

>903_bases
ATGTCACTCTTTTCCAACCTTCCTCCCAGTGTCTTGCAATGGTTTGCGATTTTTATGTCCATTATCATTGAAGCTCTTCC
TTTTGTGCTCCTAGGAACTATTTTATCTGGTTGTATTGAAGTCTTTGTAACGCCAGAATTGGTTCAAAAATACCTACCTA
AGCAAAAATGCTTGCGCATTCTGTTTGGAACCTTTGTTGGATTTGTTTTTCCTTCTTGTGAATGCGGGATTATTCCCATC
ATCAACCGCTTTTTGGAAAAAAAGGTGCCTAGTTATACGGCCGTCCCTTTTCTGGCAACAGCGCCTATTATTAATCCTAT
TGTTTTGTTCGCTACTTATTCTGCTTTTGGGAATTCTTTGCGCTTTCTGATACTTCGCTTGGTCGGTGCTGCACTAGTAG
CCATTACACTTGGGGTAATGTTAGCTTTTATTGTAGATGATAACATTCTCAAGGATAATGCTCAACCCGTGCATTTTCAT
GATTATTCTCATGAAAGCTTGCCAAAACGCATTTATCTAGCACTGGTACATGCTATTGATGAATTCTTCGACACCGGTAG
GTATCTCGTATTTGGAACCTTGATTGCCTCTGCCATGCAAATATATGTCCCAACTCGTGTGTTGACAACGATTGGGCACA
ATCCCTTGACAGCCATTTTGATCATGATGCTGATGGCTTTCATTCTATCATTATGTAGTGAAGCCGATGCCTTTATCGGA
GCTTCCTTATTATCCACCTTTGGAGTGGCTCCAGTTCTTGCCTTTCTTTTAATTGGTCCTATGGTGGATATTAAAAACCT
TATGATGATGGTAAAGGCTTTTAAAGGACGCTTCATTGTCCAATTTATCGGCGTATCCGTTCTTATGATTGCCGTTTATT
GTTTACTTGTGGGGGTGCTCTAA

Upstream 100 bases:

>100_bases
GTTGAGAGATTTTTAGCGATCAGGCTAACAAAACGTATCAGTCGAGGCTGAACATTCGTGTTTCAGCCTCCTCTTTTATC
ATCTAGAAAGGATATGGTGA

Downstream 100 bases:

>100_bases
TGATTCGCTTTTTAATTTTATCTGGCTATTTTGAACTAACCATGTATCTCCAGCTGTCTGGCAAACTGGATCAGTACATC
AATGTTCGGTATTCTTACCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MSLFSNLPPSVLQWFAIFMSIIIEALPFVLLGTILSGCIEVFVTPELVQKYLPKQKCLRILFGTFVGFVFPSCECGIIPI
INRFLEKKVPSYTAVPFLATAPIINPIVLFATYSAFGNSLRFLILRLVGAALVAITLGVMLAFIVDDNILKDNAQPVHFH
DYSHESLPKRIYLALVHAIDEFFDTGRYLVFGTLIASAMQIYVPTRVLTTIGHNPLTAILIMMLMAFILSLCSEADAFIG
ASLLSTFGVAPVLAFLLIGPMVDIKNLMMMVKAFKGRFIVQFIGVSVLMIAVYCLLVGVL

Sequences:

>Translated_300_residues
MSLFSNLPPSVLQWFAIFMSIIIEALPFVLLGTILSGCIEVFVTPELVQKYLPKQKCLRILFGTFVGFVFPSCECGIIPI
INRFLEKKVPSYTAVPFLATAPIINPIVLFATYSAFGNSLRFLILRLVGAALVAITLGVMLAFIVDDNILKDNAQPVHFH
DYSHESLPKRIYLALVHAIDEFFDTGRYLVFGTLIASAMQIYVPTRVLTTIGHNPLTAILIMMLMAFILSLCSEADAFIG
ASLLSTFGVAPVLAFLLIGPMVDIKNLMMMVKAFKGRFIVQFIGVSVLMIAVYCLLVGVL
>Mature_299_residues
SLFSNLPPSVLQWFAIFMSIIIEALPFVLLGTILSGCIEVFVTPELVQKYLPKQKCLRILFGTFVGFVFPSCECGIIPII
NRFLEKKVPSYTAVPFLATAPIINPIVLFATYSAFGNSLRFLILRLVGAALVAITLGVMLAFIVDDNILKDNAQPVHFHD
YSHESLPKRIYLALVHAIDEFFDTGRYLVFGTLIASAMQIYVPTRVLTTIGHNPLTAILIMMLMAFILSLCSEADAFIGA
SLLSTFGVAPVLAFLLIGPMVDIKNLMMMVKAFKGRFIVQFIGVSVLMIAVYCLLVGVL

Specific function: Unknown

COG id: COG0701

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0718 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005524 [H]

Pfam domain/function: PF03773 DUF318 [H]

EC number: NA

Molecular weight: Translated: 33038; Mature: 32906

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFSNLPPSVLQWFAIFMSIIIEALPFVLLGTILSGCIEVFVTPELVQKYLPKQKCLRI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHH
LFGTFVGFVFPSCECGIIPIINRFLEKKVPSYTAVPFLATAPIINPIVLFATYSAFGNSL
HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RFLILRLVGAALVAITLGVMLAFIVDDNILKDNAQPVHFHDYSHESLPKRIYLALVHAID
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHH
EFFDTGRYLVFGTLIASAMQIYVPTRVLTTIGHNPLTAILIMMLMAFILSLCSEADAFIG
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ASLLSTFGVAPVLAFLLIGPMVDIKNLMMMVKAFKGRFIVQFIGVSVLMIAVYCLLVGVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLFSNLPPSVLQWFAIFMSIIIEALPFVLLGTILSGCIEVFVTPELVQKYLPKQKCLRI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHH
LFGTFVGFVFPSCECGIIPIINRFLEKKVPSYTAVPFLATAPIINPIVLFATYSAFGNSL
HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RFLILRLVGAALVAITLGVMLAFIVDDNILKDNAQPVHFHDYSHESLPKRIYLALVHAID
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHH
EFFDTGRYLVFGTLIASAMQIYVPTRVLTTIGHNPLTAILIMMLMAFILSLCSEADAFIG
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ASLLSTFGVAPVLAFLLIGPMVDIKNLMMMVKAFKGRFIVQFIGVSVLMIAVYCLLVGVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]