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The map label for this gene is glpB

Identifier: 218930828

GI number: 218930828

Start: 4290942

End: 4292216

Strand: Reverse

Name: glpB

Synonym: YPO3825

Alternate gene names: 218930828

Gene position: 4292216-4290942 (Counterclockwise)

Preceding gene: 218930829

Following gene: 218930827

Centisome position: 92.23

GC content: 52.39

Gene sequence:

>1275_bases
ATGAAATTTGATGTGATCATCATTGGCGGTGGCTTGGCCGGGTTGGCCTGTGGTATTCGTTTGGCCGAACAAGGTAAATA
TTGTGCGATTGTCAGTTCCGGACAAAATGCACTGCATTTTTCCTCTGGTTCTCTGGATCTCTTGGCAAAATTACCCGATG
GGCAGGCGGTCAGCCAGCCATTATCGGCACTCAGTGCATTAGCTGAATTAGCCCCTGAACATCCTTACAGTAAAATGCGG
AATATCACGCAATTGGATGAGTTGGTACAGGAAGCCGAGGCTCTATTACGGCGGTGCGGTCTGGATATCGTTGGGAGTAG
CGCTGAAAACCACTTACGTCTGACGCCATTGGGTAGCTGCCGTCCCACATGGTTGAGCCTGGCGGACATCCCGGTTGCAC
CGTTAAATGGCCCGCTGCCGTGGCAACGCGTGGCCGTGATTGGTATTGAAGGCTTTCTCGATTTTCAGCCACAGATGGTC
GCGAGTGCCTTACAGGATCAGGGTATTGATGCGACGGCAGATTATTTACATTTACCGGCGCTGGATCGGTTGCGGGATAA
TCCGAGCGAATTCAGAGCGGTAAACATCGCTCGAATACTGGATTTACCGGAAAATCGACAACCCTTAGCGGATGAGTTAT
CCCGCCTGTCATCTACCGCTGAAATGATTCTATTGCCCGCCTGTATTGGGCTGGATAAATCTGCGCCATTAGATGCCCTA
CGCGCCGTGGTCGGCAAACCTATTCAACTGTTGCCGACATTACCTCCTTCGCTGTTAGGGATGCGCTTACATCAGGCGCT
GCGCCATCGCTTCCAACAATTGGGGGGCTTAGTGATGCCGGGTGATGCGGTTTTGCGGGCGGAATTGGTTGATAACCGGA
TCACTGGCCTTTATAGCCGCAACCACGGTGATATTCCTCTACGAGCTGCGCAGATGGTACTGGCCAGTGGCAGTTTCTTC
AGCAATGGGCTGGTTGCCACCTTCGATAAAATCTATGAACCGATACTGGATCTGGATATTTTATCACTGCCTCACCGCGC
AGACTGGAGCCACAGTAATCTGTTTGCGCCGCAGCCTTATCTGCAGTTTGGTGTCAACACGGATAACCATTTACGGCCGC
TGCGTGGCGGTGTCGCCCTAGAGAATCTACATGCCATCGGTGCCGTTCTGGGGGGATATGATCCGCTCCAGCAAGGTTGT
GGCGCGGGTGTTTCATTGACCAGTGCTGTGTTTGTCGCCGAACAGATTATCAGCGAGATGGCGGTGACATTATGA

Upstream 100 bases:

>100_bases
GGTGATGCATTGCGTGAGAGTGAGTTTACCCAGTGGGTCTATCAGGGACTCTGTGGTTTGGATGAGATTCCAGCCACCGT
GAATGCGCGGGAGAAACACG

Downstream 100 bases:

>100_bases
CAGGGTTGCCAAAGCATGATGCTAGCCCCGAACAGGATGGCATGATGGTGGGCGATAGCCGTCTCACGCGAGATAATAGC
TTCGAAAGCTGTATCAAATG

Product: anaerobic glycerol-3-phosphate dehydrogenase subunit B

Products: NA

Alternate protein names: Anaerobic G-3-P dehydrogenase subunit B; Anaerobic G3Pdhase B

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MKFDVIIIGGGLAGLACGIRLAEQGKYCAIVSSGQNALHFSSGSLDLLAKLPDGQAVSQPLSALSALAELAPEHPYSKMR
NITQLDELVQEAEALLRRCGLDIVGSSAENHLRLTPLGSCRPTWLSLADIPVAPLNGPLPWQRVAVIGIEGFLDFQPQMV
ASALQDQGIDATADYLHLPALDRLRDNPSEFRAVNIARILDLPENRQPLADELSRLSSTAEMILLPACIGLDKSAPLDAL
RAVVGKPIQLLPTLPPSLLGMRLHQALRHRFQQLGGLVMPGDAVLRAELVDNRITGLYSRNHGDIPLRAAQMVLASGSFF
SNGLVATFDKIYEPILDLDILSLPHRADWSHSNLFAPQPYLQFGVNTDNHLRPLRGGVALENLHAIGAVLGGYDPLQQGC
GAGVSLTSAVFVAEQIISEMAVTL

Sequences:

>Translated_424_residues
MKFDVIIIGGGLAGLACGIRLAEQGKYCAIVSSGQNALHFSSGSLDLLAKLPDGQAVSQPLSALSALAELAPEHPYSKMR
NITQLDELVQEAEALLRRCGLDIVGSSAENHLRLTPLGSCRPTWLSLADIPVAPLNGPLPWQRVAVIGIEGFLDFQPQMV
ASALQDQGIDATADYLHLPALDRLRDNPSEFRAVNIARILDLPENRQPLADELSRLSSTAEMILLPACIGLDKSAPLDAL
RAVVGKPIQLLPTLPPSLLGMRLHQALRHRFQQLGGLVMPGDAVLRAELVDNRITGLYSRNHGDIPLRAAQMVLASGSFF
SNGLVATFDKIYEPILDLDILSLPHRADWSHSNLFAPQPYLQFGVNTDNHLRPLRGGVALENLHAIGAVLGGYDPLQQGC
GAGVSLTSAVFVAEQIISEMAVTL
>Mature_424_residues
MKFDVIIIGGGLAGLACGIRLAEQGKYCAIVSSGQNALHFSSGSLDLLAKLPDGQAVSQPLSALSALAELAPEHPYSKMR
NITQLDELVQEAEALLRRCGLDIVGSSAENHLRLTPLGSCRPTWLSLADIPVAPLNGPLPWQRVAVIGIEGFLDFQPQMV
ASALQDQGIDATADYLHLPALDRLRDNPSEFRAVNIARILDLPENRQPLADELSRLSSTAEMILLPACIGLDKSAPLDAL
RAVVGKPIQLLPTLPPSLLGMRLHQALRHRFQQLGGLVMPGDAVLRAELVDNRITGLYSRNHGDIPLRAAQMVLASGSFF
SNGLVATFDKIYEPILDLDILSLPHRADWSHSNLFAPQPYLQFGVNTDNHLRPLRGGVALENLHAIGAVLGGYDPLQQGC
GAGVSLTSAVFVAEQIISEMAVTL

Specific function: Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor

COG id: COG3075

COG function: function code E; Anaerobic glycerol-3-phosphate dehydrogenase

Gene ontology:

Cell location: Loosely Bound To The Cytoplasm Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic G-3-P dehydrogenase subunit B family

Homologues:

Organism=Escherichia coli, GI1788575, Length=416, Percent_Identity=49.7596153846154, Blast_Score=365, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GLPB_YERPA (Q1CBK6)

Other databases:

- EMBL:   CP000308
- RefSeq:   YP_650111.1
- ProteinModelPortal:   Q1CBK6
- SMR:   Q1CBK6
- STRING:   Q1CBK6
- GeneID:   4122126
- GenomeReviews:   CP000308_GR
- KEGG:   ypa:YPA_0197
- eggNOG:   COG3075
- HOGENOM:   HBG297155
- OMA:   LEHKLAF
- ProtClustDB:   PRK05329
- BioCyc:   YPES360102:YPA_0197-MONOMER
- HAMAP:   MF_00753
- InterPro:   IPR003953
- InterPro:   IPR009158
- PIRSF:   PIRSF000141
- TIGRFAMs:   TIGR03378

Pfam domain/function: PF00890 FAD_binding_2

EC number: =1.1.5.3

Molecular weight: Translated: 45507; Mature: 45507

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFDVIIIGGGLAGLACGIRLAEQGKYCAIVSSGQNALHFSSGSLDLLAKLPDGQAVSQP
CEEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCEEEEEECCCCHHHHHH
LSALSALAELAPEHPYSKMRNITQLDELVQEAEALLRRCGLDIVGSSAENHLRLTPLGSC
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEECCCC
RPTWLSLADIPVAPLNGPLPWQRVAVIGIEGFLDFQPQMVASALQDQGIDATADYLHLPA
CCCCEECCCCCCCCCCCCCCHHHEEEEEECCHHCCCHHHHHHHHHHCCCCCCHHHEECCC
LDRLRDNPSEFRAVNIARILDLPENRQPLADELSRLSSTAEMILLPACIGLDKSAPLDAL
HHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
RAVVGKPIQLLPTLPPSLLGMRLHQALRHRFQQLGGLVMPGDAVLRAELVDNRITGLYSR
HHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHHHHCCC
NHGDIPLRAAQMVLASGSFFSNGLVATFDKIYEPILDLDILSLPHRADWSHSNLFAPQPY
CCCCCCHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCH
LQFGVNTDNHLRPLRGGVALENLHAIGAVLGGYDPLQQGCGAGVSLTSAVFVAEQIISEM
HEECCCCCCCCCHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
AVTL
HHCC
>Mature Secondary Structure
MKFDVIIIGGGLAGLACGIRLAEQGKYCAIVSSGQNALHFSSGSLDLLAKLPDGQAVSQP
CEEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCEEEEEECCCCHHHHHH
LSALSALAELAPEHPYSKMRNITQLDELVQEAEALLRRCGLDIVGSSAENHLRLTPLGSC
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEECCCC
RPTWLSLADIPVAPLNGPLPWQRVAVIGIEGFLDFQPQMVASALQDQGIDATADYLHLPA
CCCCEECCCCCCCCCCCCCCHHHEEEEEECCHHCCCHHHHHHHHHHCCCCCCHHHEECCC
LDRLRDNPSEFRAVNIARILDLPENRQPLADELSRLSSTAEMILLPACIGLDKSAPLDAL
HHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
RAVVGKPIQLLPTLPPSLLGMRLHQALRHRFQQLGGLVMPGDAVLRAELVDNRITGLYSR
HHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHHHHCCC
NHGDIPLRAAQMVLASGSFFSNGLVATFDKIYEPILDLDILSLPHRADWSHSNLFAPQPY
CCCCCCHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCH
LQFGVNTDNHLRPLRGGVALENLHAIGAVLGGYDPLQQGCGAGVSLTSAVFVAEQIISEM
HEECCCCCCCCCHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
AVTL
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA