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The map label for this gene is ubiD

Identifier: 218930773

GI number: 218930773

Start: 4233103

End: 4234599

Strand: Reverse

Name: ubiD

Synonym: YPO3769

Alternate gene names: 218930773

Gene position: 4234599-4233103 (Counterclockwise)

Preceding gene: 218930775

Following gene: 218930772

Centisome position: 90.99

GC content: 48.56

Gene sequence:

>1497_bases
ATGATCAGCATGAAATACCGTGACTTACGTGACTTCCTCTCATTACTGGAACAGAGGGGGGAACTTAAACGCATTAGCCA
GCCCATTGATCCTTATTTGGAAATGACAGAAATTGCCGATCGCACGTTACGTGCTGGTGGGCCTGCGTTACTTTTTGAGA
ACCCTAAAGGTTACAGCATGCCCGTGTTGTGTAATCTGTTTGGCACCGCTAAGCGAGTCGCCATGGGGATGGGGCAAGAA
GATGTCAGCGCCCTGCGAGATGTTGGTAAATTATTGGCCTTCCTGAAAGAACCCGATCCCCCAAAAGGTTTCCGTGACTT
ATTTGATAAGCTGCCAAAATTTAAGCAGGTATTGAATATGCCAACGAAACGCTTGAACTCGGCCCCGTGTCAGGAGCAAG
TTTGGCAAGGTGAGGATGTTGATTTAAGTCGCATCCCTGTGATGCACTGCTGGCCAGAAGATGCCGCACCACTAGTCTCT
TGGGGGTTGACTATTACACGTGGTCCCCACAAAGAACGGCAGAATCTAGGCATCTATCGCCAGCAGGTATTGGGTAAAAA
CAAATTAATTATGCGTTGGCTATCGCATCGTGGTGGTGCGCTGGATTATCAGGAGTGGTGTGAGGCACACCCTGGTGAAC
GTTTTCCGGTCGCTGTCGCCTTGGGAGCAGACCCTGCTACGATCTTAGCCGCAGTGACCCCGGTACCAGACACGCTGTCT
GAATATGCCTTTGCCGGCTTGTTACGCGGCCATAAAACGGAAGTGGTGAAGTGTCTTTCCAATGACCTTGAAGTTCCTGC
AAGTGCAGAAATTGTATTGGAAGGATATATCGAACAAGGTGATATGGCTCCGGAAGGTCCTTATGGTGATCATACGGGCT
ATTACAATGAAATAGATAATTTCCCCGTGTTTACCGTCACGCATATTACACAGCGCCAAGACGCAATTTATCATTCAACC
TATACGGGCCGACCACCGGATGAACCTGCGGTAATGGGGGTGGCACTGAACGAAGTCTTTGTACCTATTTTGCAAAAGCA
ATTCCCGGAAATTGTTGATTTCTACTTGCCACCAGAAGGGTGCTCATACCGGTTGGCGGTGGTAACCATCAAGAAACAAT
ATGCAGGCCATGCCAAACGCGTGATGATGGGAATATGGTCGTTTTTACGCCAGTTTATGTATACCAAGTTTGTTATTGTT
TGTGATGACGATATTAATGCTCGTGATTGGAATGATGTAATTTGGGCGATCACCACCCGGATGGACCCATCCCGCGATAC
GGTGTTAATTGAAAATACACCGATAGATTATTTGGATTTCGCCTCACCGGTTTCCGGTTTGGGATCGAAAATGGGGCTGG
ATGCCACCAACAAATGGCCAGCAGAGACTCCGCGTGAATGGGGGCGTCCAATTAAGATGGACGAAGACGTCCGTGCCCGT
ATTGATGCTCTGTGGGATGAGCTGGCCATTTTCAGTGACAAAGACGCGAAACGCTAA

Upstream 100 bases:

>100_bases
AACATGACGTTATTTTAAGGTGAGTTTGTATTCATTTTTAACAAAAAGACAGCAACCACTATAAAGACAGCTTATAATGG
CGCATCCCATAGCCGCCGAA

Downstream 100 bases:

>100_bases
CTAGCGTCGGCTTTGTACTTGGTTTTGCATTTGATGACCCGACAGAGGGAAGGCATGACAACTTTAAGCTGTAAAGTAAC
CTCCGTAGAGGCCATTACCG

Product: 3-octaprenyl-4-hydroxybenzoate decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MISMKYRDLRDFLSLLEQRGELKRISQPIDPYLEMTEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTAKRVAMGMGQE
DVSALRDVGKLLAFLKEPDPPKGFRDLFDKLPKFKQVLNMPTKRLNSAPCQEQVWQGEDVDLSRIPVMHCWPEDAAPLVS
WGLTITRGPHKERQNLGIYRQQVLGKNKLIMRWLSHRGGALDYQEWCEAHPGERFPVAVALGADPATILAAVTPVPDTLS
EYAFAGLLRGHKTEVVKCLSNDLEVPASAEIVLEGYIEQGDMAPEGPYGDHTGYYNEIDNFPVFTVTHITQRQDAIYHST
YTGRPPDEPAVMGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGIWSFLRQFMYTKFVIV
CDDDINARDWNDVIWAITTRMDPSRDTVLIENTPIDYLDFASPVSGLGSKMGLDATNKWPAETPREWGRPIKMDEDVRAR
IDALWDELAIFSDKDAKR

Sequences:

>Translated_498_residues
MISMKYRDLRDFLSLLEQRGELKRISQPIDPYLEMTEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTAKRVAMGMGQE
DVSALRDVGKLLAFLKEPDPPKGFRDLFDKLPKFKQVLNMPTKRLNSAPCQEQVWQGEDVDLSRIPVMHCWPEDAAPLVS
WGLTITRGPHKERQNLGIYRQQVLGKNKLIMRWLSHRGGALDYQEWCEAHPGERFPVAVALGADPATILAAVTPVPDTLS
EYAFAGLLRGHKTEVVKCLSNDLEVPASAEIVLEGYIEQGDMAPEGPYGDHTGYYNEIDNFPVFTVTHITQRQDAIYHST
YTGRPPDEPAVMGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGIWSFLRQFMYTKFVIV
CDDDINARDWNDVIWAITTRMDPSRDTVLIENTPIDYLDFASPVSGLGSKMGLDATNKWPAETPREWGRPIKMDEDVRAR
IDALWDELAIFSDKDAKR
>Mature_498_residues
MISMKYRDLRDFLSLLEQRGELKRISQPIDPYLEMTEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTAKRVAMGMGQE
DVSALRDVGKLLAFLKEPDPPKGFRDLFDKLPKFKQVLNMPTKRLNSAPCQEQVWQGEDVDLSRIPVMHCWPEDAAPLVS
WGLTITRGPHKERQNLGIYRQQVLGKNKLIMRWLSHRGGALDYQEWCEAHPGERFPVAVALGADPATILAAVTPVPDTLS
EYAFAGLLRGHKTEVVKCLSNDLEVPASAEIVLEGYIEQGDMAPEGPYGDHTGYYNEIDNFPVFTVTHITQRQDAIYHST
YTGRPPDEPAVMGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGIWSFLRQFMYTKFVIV
CDDDINARDWNDVIWAITTRMDPSRDTVLIENTPIDYLDFASPVSGLGSKMGLDATNKWPAETPREWGRPIKMDEDVRAR
IDALWDELAIFSDKDAKR

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family

Homologues:

Organism=Escherichia coli, GI1790277, Length=493, Percent_Identity=89.0466531440162, Blast_Score=936, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=440, Percent_Identity=26.5909090909091, Blast_Score=142, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UBID_YERPA (Q1C2C1)

Other databases:

- EMBL:   CP000308
- RefSeq:   YP_653346.2
- ProteinModelPortal:   Q1C2C1
- SMR:   Q1C2C1
- STRING:   Q1C2C1
- GeneID:   4119642
- GenomeReviews:   CP000308_GR
- KEGG:   ypa:YPA_3439
- eggNOG:   COG0043
- HOGENOM:   HBG564733
- ProtClustDB:   PRK10922
- BioCyc:   YPES360102:YPA_3439-MONOMER
- HAMAP:   MF_01636
- InterPro:   IPR002830
- InterPro:   IPR009002
- TIGRFAMs:   TIGR00148

Pfam domain/function: PF01977 UbiD; SSF50475 FMN_binding

EC number: 4.1.1.-

Molecular weight: Translated: 56311; Mature: 56311

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISMKYRDLRDFLSLLEQRGELKRISQPIDPYLEMTEIADRTLRAGGPALLFENPKGYSM
CCCCCHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
PVLCNLFGTAKRVAMGMGQEDVSALRDVGKLLAFLKEPDPPKGFRDLFDKLPKFKQVLNM
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
PTKRLNSAPCQEQVWQGEDVDLSRIPVMHCWPEDAAPLVSWGLTITRGPHKERQNLGIYR
CHHHHCCCCCHHHHCCCCCCCHHCCCEEEECCCCCCHHHHCCEEEECCCCHHHHHHHHHH
QQVLGKNKLIMRWLSHRGGALDYQEWCEAHPGERFPVAVALGADPATILAAVTPVPDTLS
HHHHCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECCCCHHHHEEECCCCHHHH
EYAFAGLLRGHKTEVVKCLSNDLEVPASAEIVLEGYIEQGDMAPEGPYGDHTGYYNEIDN
HHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCC
FPVFTVTHITQRQDAIYHSTYTGRPPDEPAVMGVALNEVFVPILQKQFPEIVDFYLPPEG
CCEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCC
CSYRLAVVTIKKQYAGHAKRVMMGIWSFLRQFMYTKFVIVCDDDINARDWNDVIWAITTR
CCEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEEC
MDPSRDTVLIENTPIDYLDFASPVSGLGSKMGLDATNKWPAETPREWGRPIKMDEDVRAR
CCCCCCEEEEECCCCCHHHHHCHHHHCCHHCCCCCCCCCCCCCCHHHCCCCCCCHHHHHH
IDALWDELAIFSDKDAKR
HHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MISMKYRDLRDFLSLLEQRGELKRISQPIDPYLEMTEIADRTLRAGGPALLFENPKGYSM
CCCCCHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
PVLCNLFGTAKRVAMGMGQEDVSALRDVGKLLAFLKEPDPPKGFRDLFDKLPKFKQVLNM
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
PTKRLNSAPCQEQVWQGEDVDLSRIPVMHCWPEDAAPLVSWGLTITRGPHKERQNLGIYR
CHHHHCCCCCHHHHCCCCCCCHHCCCEEEECCCCCCHHHHCCEEEECCCCHHHHHHHHHH
QQVLGKNKLIMRWLSHRGGALDYQEWCEAHPGERFPVAVALGADPATILAAVTPVPDTLS
HHHHCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECCCCHHHHEEECCCCHHHH
EYAFAGLLRGHKTEVVKCLSNDLEVPASAEIVLEGYIEQGDMAPEGPYGDHTGYYNEIDN
HHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCC
FPVFTVTHITQRQDAIYHSTYTGRPPDEPAVMGVALNEVFVPILQKQFPEIVDFYLPPEG
CCEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCC
CSYRLAVVTIKKQYAGHAKRVMMGIWSFLRQFMYTKFVIVCDDDINARDWNDVIWAITTR
CCEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEEC
MDPSRDTVLIENTPIDYLDFASPVSGLGSKMGLDATNKWPAETPREWGRPIKMDEDVRAR
CCCCCCEEEEECCCCCHHHHHCHHHHCCHHCCCCCCCCCCCCCCHHHCCCCCCCHHHHHH
IDALWDELAIFSDKDAKR
HHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA