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The map label for this gene is yjcD [H]

Identifier: 218930639

GI number: 218930639

Start: 4046606

End: 4047961

Strand: Direct

Name: yjcD [H]

Synonym: YPO3629

Alternate gene names: 218930639

Gene position: 4046606-4047961 (Clockwise)

Preceding gene: 218930637

Following gene: 218930640

Centisome position: 86.95

GC content: 53.39

Gene sequence:

>1356_bases
ATGTCTAGCAGCAACCCTCAAGCACAGCCAAAGGGCACGCTTGATGCATTCTTTAAGCTTAGTGAACGTGGCAGTAATGT
ACGCCAAGAAGTGCTGGCCGGTCTGACGACTTTTCTGGCGATGGTTTATTCGGTGATTGTGGTACCGAGTATGCTAGGCA
AAGCCGGTTTCCCACCGACGGCGGTGTTTGTCGCGACCTGCCTGGTTGCGGGTCTCGGTTCTCTGTTGATGGGTCTGTGG
GCTAACCTGCCAATGGCTATCGGTTGTGCCATCTCACTGACAGCATTTACCGCGTTCAGTCTGGTATTGGGCCAGCAAAT
CAGTATCCCAGTGGCATTGGGTGCGGTCTTCCTGATGGGGGTGCTGTTTACCATTATCTCAGTAACCGGTATCCGTTCGT
GGATCCTGCGTAACTTGCCAATGGGGGTTGCGCACGGTACGGGCATCGGTATTGGTCTGTTCTTGCTGTTGATTGCCGCA
AACGGTGTCGGCTTGGTTATCAAAAACCCGATTGAAGGTTTACCGGTCGCGTTGGGGGCATTTACCTCTTTCCCGGTGAT
AATGACCTTGCTGGGTCTGGCCGTGATTTTTGGTCTGGAGAAACTGCGAGTGCCGGGGGGGATTTTACTGGTGATTGTCG
CCATCTCGGTGATCGGCCTGATTTTTGATCCAAGCGTGACCTATCAGGGTCTGTTCGCGATGCCAAGTCTGGCGGATGCT
AACGGCGACTCTTTGATTTTCAGCCTTGATATCATGGGCGCTTTACAACCCGTGGTATTGCCAAGCGTACTGGCGTTAGT
GATGACCGCGGTATTTGATGCGACCGGGACTATCCGCGCGGTTGCGGGGCAGGCTAACTTGTTGGATAAAGACGGCCAAA
TCATCAGCGGTGGTAAAGCGCTGACCACTGACTCCGTCAGTAGCATTTTTGCGGGTTTGGTGGGGGCGGCACCGGCGGCG
GTTTATATTGAATCGGCTGCTGGCACTGCAGCGGGCGGCAAAACTGGTTTGACGGCGACGGTGGTCGGTATCCTGTTCCT
GTTGATTTTGTTCCTCTCGCCGCTGTCGTATTTGGTTCCGGCTTATGCCACCGCTCCGGCGCTGATGTATGTTGGCTTGC
TGATGCTAAGCAATGTATCCAAACTGGATTTCGAGGACTTTGTTGATGCCATGTCCGGCCTACTGTGTGCGGTATTTATC
GTACTGACCTGCAATATCGTCACGGGTATTATGTTGGGCTTTAGCTCACTGGTTATTGGCCGGGTTTGCTCTGGTGAATG
GCGCAAACTGAACGTCGGCACGGTGATTATTGCGGTTGCACTGGTTGCATTCTACGCAGGTGGTTGGGCAATTTAA

Upstream 100 bases:

>100_bases
GGAGAGTTAGTGAGTTCATCGACAGGAACGGAAACGATTACGTAGAGAAGGGCGCTTGGCTTGGCATGCTATTTTAAAAT
GACACACAGGGGACATCACC

Downstream 100 bases:

>100_bases
GCCCACAGGGATTGCGAATGTTTGTAATGGTGGATGTTTGTAATGGTAGATACTTGTAATGGTGGATACTTCTCATCATG
GCCATTCGAGATTATGACTA

Product: putative xanthine/uracil permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 450

Protein sequence:

>451_residues
MSSSNPQAQPKGTLDAFFKLSERGSNVRQEVLAGLTTFLAMVYSVIVVPSMLGKAGFPPTAVFVATCLVAGLGSLLMGLW
ANLPMAIGCAISLTAFTAFSLVLGQQISIPVALGAVFLMGVLFTIISVTGIRSWILRNLPMGVAHGTGIGIGLFLLLIAA
NGVGLVIKNPIEGLPVALGAFTSFPVIMTLLGLAVIFGLEKLRVPGGILLVIVAISVIGLIFDPSVTYQGLFAMPSLADA
NGDSLIFSLDIMGALQPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIISGGKALTTDSVSSIFAGLVGAAPAA
VYIESAAGTAAGGKTGLTATVVGILFLLILFLSPLSYLVPAYATAPALMYVGLLMLSNVSKLDFEDFVDAMSGLLCAVFI
VLTCNIVTGIMLGFSSLVIGRVCSGEWRKLNVGTVIIAVALVAFYAGGWAI

Sequences:

>Translated_451_residues
MSSSNPQAQPKGTLDAFFKLSERGSNVRQEVLAGLTTFLAMVYSVIVVPSMLGKAGFPPTAVFVATCLVAGLGSLLMGLW
ANLPMAIGCAISLTAFTAFSLVLGQQISIPVALGAVFLMGVLFTIISVTGIRSWILRNLPMGVAHGTGIGIGLFLLLIAA
NGVGLVIKNPIEGLPVALGAFTSFPVIMTLLGLAVIFGLEKLRVPGGILLVIVAISVIGLIFDPSVTYQGLFAMPSLADA
NGDSLIFSLDIMGALQPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIISGGKALTTDSVSSIFAGLVGAAPAA
VYIESAAGTAAGGKTGLTATVVGILFLLILFLSPLSYLVPAYATAPALMYVGLLMLSNVSKLDFEDFVDAMSGLLCAVFI
VLTCNIVTGIMLGFSSLVIGRVCSGEWRKLNVGTVIIAVALVAFYAGGWAI
>Mature_450_residues
SSSNPQAQPKGTLDAFFKLSERGSNVRQEVLAGLTTFLAMVYSVIVVPSMLGKAGFPPTAVFVATCLVAGLGSLLMGLWA
NLPMAIGCAISLTAFTAFSLVLGQQISIPVALGAVFLMGVLFTIISVTGIRSWILRNLPMGVAHGTGIGIGLFLLLIAAN
GVGLVIKNPIEGLPVALGAFTSFPVIMTLLGLAVIFGLEKLRVPGGILLVIVAISVIGLIFDPSVTYQGLFAMPSLADAN
GDSLIFSLDIMGALQPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIISGGKALTTDSVSSIFAGLVGAAPAAV
YIESAAGTAAGGKTGLTATVVGILFLLILFLSPLSYLVPAYATAPALMYVGLLMLSNVSKLDFEDFVDAMSGLLCAVFIV
LTCNIVTGIMLGFSSLVIGRVCSGEWRKLNVGTVIIAVALVAFYAGGWAI

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790499, Length=448, Percent_Identity=85.0446428571429, Blast_Score=753, Evalue=0.0,
Organism=Escherichia coli, GI48994909, Length=449, Percent_Identity=86.6369710467706, Blast_Score=742, Evalue=0.0,
Organism=Escherichia coli, GI87082309, Length=440, Percent_Identity=39.0909090909091, Blast_Score=295, Evalue=3e-81,
Organism=Escherichia coli, GI1790150, Length=442, Percent_Identity=36.4253393665158, Blast_Score=255, Evalue=5e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 46249; Mature: 46118

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCCCEEECHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SSSNPQAQPKGTLDAFFKLSERGSNVRQEVLAGLTTFLAMVYSVIVVPSMLGKAGFPPT
CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
AVFVATCLVAGLGSLLMGLWANLPMAIGCAISLTAFTAFSLVLGQQISIPVALGAVFLMG
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VLFTIISVTGIRSWILRNLPMGVAHGTGIGIGLFLLLIAANGVGLVIKNPIEGLPVALGA
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHH
FTSFPVIMTLLGLAVIFGLEKLRVPGGILLVIVAISVIGLIFDPSVTYQGLFAMPSLADA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCC
NGDSLIFSLDIMGALQPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIISGGKA
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCEEECCCE
LTTDSVSSIFAGLVGAAPAAVYIESAAGTAAGGKTGLTATVVGILFLLILFLSPLSYLVP
ECHHHHHHHHHHHHHCCCHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AYATAPALMYVGLLMLSNVSKLDFEDFVDAMSGLLCAVFIVLTCNIVTGIMLGFSSLVIG
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVCSGEWRKLNVGTVIIAVALVAFYAGGWAI
HHCCCCCEEECHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]