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The map label for this gene is yrbD [H]

Identifier: 218930585

GI number: 218930585

Start: 3985052

End: 3985609

Strand: Reverse

Name: yrbD [H]

Synonym: YPO3573

Alternate gene names: 218930585

Gene position: 3985609-3985052 (Counterclockwise)

Preceding gene: 218930586

Following gene: 218930584

Centisome position: 85.64

GC content: 48.03

Gene sequence:

>558_bases
ATGCAAACGAAGAAAAGTGAAGTCTGGGTAGGAATGTTTATACTGATTGCTATTCTGGCAGTCATATTTCTCTGCCTAAA
AGTTGCAGATATCAAGTCAGTGGGCAATCAACCCACTTACCGTATTTACGCGAATTTTGACAATATTGGCGGCTTAAAAA
ACCACTCTCCTGTCAAAATTGGTGGCGTAGTTGTGGGGCGGGTGGCGGAAATCACCTTGGATACCAAGAACTACACGCCA
CGCGTCGCGATAGATATTCAGCAACGCTATAACCACATCCCAGATACCAGCTCATTGGCTGTACGCACATCGGGTTTACT
GGGCGAACAATTCCTGGCACTGAATGTGGGTTTTGAAGATCCGGAAATGGGCACCAGTATTTTGAAAGATGGCGGCACCA
TTCAAGACACCAAGTCTGCATTAGTTCTGGAAGATCTGATCGGCCAGTTCCTGTACAAGAGCAGCGGTGATAGCCCGGCA
GTAAGTGAAACGGCTCCGGCAACTGAAACTGCAGCTCCACAGGCTGCGGTACCTTCTCTTCCCGCTCAACATCCTTAA

Upstream 100 bases:

>100_bases
GGGATTAGCCGGGCAACGACACGTACTGTAGTGCATTCGTCACTGGCGGTATTGGGATTGGATTTTGTGCTGACAGCACT
GATGTTTGGGAACTGAGTCG

Downstream 100 bases:

>100_bases
GAGGGCATCTGAATGTTTAAACGTCTATTCATGGTCGCATTGTTGGCCATAGCACCACTGGTTCATGCTGTCGATCAAAG
CAACCCTTATCGTCTGATGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MQTKKSEVWVGMFILIAILAVIFLCLKVADIKSVGNQPTYRIYANFDNIGGLKNHSPVKIGGVVVGRVAEITLDTKNYTP
RVAIDIQQRYNHIPDTSSLAVRTSGLLGEQFLALNVGFEDPEMGTSILKDGGTIQDTKSALVLEDLIGQFLYKSSGDSPA
VSETAPATETAAPQAAVPSLPAQHP

Sequences:

>Translated_185_residues
MQTKKSEVWVGMFILIAILAVIFLCLKVADIKSVGNQPTYRIYANFDNIGGLKNHSPVKIGGVVVGRVAEITLDTKNYTP
RVAIDIQQRYNHIPDTSSLAVRTSGLLGEQFLALNVGFEDPEMGTSILKDGGTIQDTKSALVLEDLIGQFLYKSSGDSPA
VSETAPATETAAPQAAVPSLPAQHP
>Mature_185_residues
MQTKKSEVWVGMFILIAILAVIFLCLKVADIKSVGNQPTYRIYANFDNIGGLKNHSPVKIGGVVVGRVAEITLDTKNYTP
RVAIDIQQRYNHIPDTSSLAVRTSGLLGEQFLALNVGFEDPEMGTSILKDGGTIQDTKSALVLEDLIGQFLYKSSGDSPA
VSETAPATETAAPQAAVPSLPAQHP

Specific function: Part of the ABC transporter complex mlaFEDB that actively prevents phospholipid accumulation at the cell surface. Probably maintains lipid asymmetry in the outer membrane by retrograde trafficking of phospholipids from the outer membrane to the inner memb

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=173, Percent_Identity=71.6763005780347, Blast_Score=248, Evalue=1e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 19796; Mature: 19796

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTKKSEVWVGMFILIAILAVIFLCLKVADIKSVGNQPTYRIYANFDNIGGLKNHSPVKI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEE
GGVVVGRVAEITLDTKNYTPRVAIDIQQRYNHIPDTSSLAVRTSGLLGEQFLALNVGFED
CCEEEEEEEEEEEECCCCCCEEEEEHHHHCCCCCCCCCEEEEECCCCCCEEEEEECCCCC
PEMGTSILKDGGTIQDTKSALVLEDLIGQFLYKSSGDSPAVSETAPATETAAPQAAVPSL
CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAQHP
CCCCC
>Mature Secondary Structure
MQTKKSEVWVGMFILIAILAVIFLCLKVADIKSVGNQPTYRIYANFDNIGGLKNHSPVKI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEE
GGVVVGRVAEITLDTKNYTPRVAIDIQQRYNHIPDTSSLAVRTSGLLGEQFLALNVGFED
CCEEEEEEEEEEEECCCCCCEEEEEHHHHCCCCCCCCCEEEEECCCCCCEEEEEECCCCC
PEMGTSILKDGGTIQDTKSALVLEDLIGQFLYKSSGDSPAVSETAPATETAAPQAAVPSL
CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAQHP
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]