Click here to switch to the map view.

The map label for this gene is yraN [C]

Identifier: 218930561

GI number: 218930561

Start: 3959164

End: 3959517

Strand: Direct

Name: yraN [C]

Synonym: YPO3549

Alternate gene names: 218930561

Gene position: 3959164-3959517 (Clockwise)

Preceding gene: 218930560

Following gene: 218930562

Centisome position: 85.08

GC content: 54.52

Gene sequence:

>354_bases
ATGAGCCAACGGGATACTGGCGCACATTACGAAAACCTGGCTCGTCGCCATCTGGAGCGAGCAGGTCTCGTTTTTCAAGC
GGCCAATGTTGCCTTCCGTGGAGGCGAAATTGACCTTATTATGCGTGATGGGGATGCATGGGTATTCGTCGAGGTTCGCT
TTCGGCGCAATGACCTGTTTGGTGGTGCAGCCGCCAGTATCACCCCGCGCAAGCAACAACGGCTACATCTGGCCGCCGCT
GTTTGGCTGGCACAACGCGGCGCCAGTTTTGCCACAACATCCTGTCGTTTTGATGTAGTGGCGATAACCGGTAACCAGTT
AGAATGGCTACCCAACGCTTTCAATACGGATTGA

Upstream 100 bases:

>100_bases
TGGTGCCACTCGCATAATTCAGTCACATTCTTCTCATATGTTGTAGAGAATGATGTGGTAGAAAATATTGTCGAGTGATT
AAGGATTTTAGGGACTATCG

Downstream 100 bases:

>100_bases
TGTTTATTTTCCAATTGATACCGAGCTATACCCAAATAATTCGAGTTGCAGGCAGACGGCAAGCGAGAGAAAAATTGGTC
TGGAACCAATTTGAACAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MSQRDTGAHYENLARRHLERAGLVFQAANVAFRGGEIDLIMRDGDAWVFVEVRFRRNDLFGGAAASITPRKQQRLHLAAA
VWLAQRGASFATTSCRFDVVAITGNQLEWLPNAFNTD

Sequences:

>Translated_117_residues
MSQRDTGAHYENLARRHLERAGLVFQAANVAFRGGEIDLIMRDGDAWVFVEVRFRRNDLFGGAAASITPRKQQRLHLAAA
VWLAQRGASFATTSCRFDVVAITGNQLEWLPNAFNTD
>Mature_116_residues
SQRDTGAHYENLARRHLERAGLVFQAANVAFRGGEIDLIMRDGDAWVFVEVRFRRNDLFGGAAASITPRKQQRLHLAAAV
WLAQRGASFATTSCRFDVVAITGNQLEWLPNAFNTD

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

Organism=Escherichia coli, GI1789538, Length=115, Percent_Identity=57.3913043478261, Blast_Score=131, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1121_YERPG (A9R1Q7)

Other databases:

- EMBL:   CP000901
- RefSeq:   YP_001605667.1
- ProteinModelPortal:   A9R1Q7
- GeneID:   5799585
- GenomeReviews:   CP000901_GR
- KEGG:   ypg:YpAngola_A1121
- HOGENOM:   HBG710155
- OMA:   QWLKNAF
- ProtClustDB:   PRK12497
- BioCyc:   YPES349746:YPANGOLA_A1121-MONOMER
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10
- TIGRFAMs:   TIGR00252

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 13077; Mature: 12946

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQRDTGAHYENLARRHLERAGLVFQAANVAFRGGEIDLIMRDGDAWVFVEVRFRRNDLF
CCCCCCCCHHHHHHHHHHHHCCEEEEECCEEEECCCEEEEEECCCEEEEEEEEEECCCCC
GGAAASITPRKQQRLHLAAAVWLAQRGASFATTSCRFDVVAITGNQLEWLPNAFNTD
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCEEEEEEEECCCEEECCCCCCCC
>Mature Secondary Structure 
SQRDTGAHYENLARRHLERAGLVFQAANVAFRGGEIDLIMRDGDAWVFVEVRFRRNDLF
CCCCCCCHHHHHHHHHHHHCCEEEEECCEEEECCCEEEEEECCCEEEEEEEEEECCCCC
GGAAASITPRKQQRLHLAAAVWLAQRGASFATTSCRFDVVAITGNQLEWLPNAFNTD
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCEEEEEEEECCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA