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The map label for this gene is yhaJ [H]

Identifier: 218930557

GI number: 218930557

Start: 3953349

End: 3954242

Strand: Reverse

Name: yhaJ [H]

Synonym: YPO3545

Alternate gene names: 218930557

Gene position: 3954242-3953349 (Counterclockwise)

Preceding gene: 218930559

Following gene: 218930554

Centisome position: 84.97

GC content: 52.8

Gene sequence:

>894_bases
ATGGCCAGAGATCGGGCATTAACGCTAGAGGCATTACGCGTCATGGATGCCATTGACCGTCGTGGCAGTTTTGCTGCGGC
GGCTGATGAATTGGGTCGGGTCCCTTCCGCCCTCAGCTATACCATGCAAAAACTTGAGGAAGAGCTTGATGTGGTGTTGT
TCGATCGTTCTGGACATCGAACCAAATTTACTAATGTCGGGCGGATGTTGCTGGAGCGTGGGCGGGTATTACTGGAAGCG
GCAGATAAATTAACCACCGATGCTGAAGCACTGGCTCGTGGTTGGGAAACTCATATCACCATTGTCAGCGAGGCGTTATC
GCCTGCCTGGAAATTATTTCCGTTGATTGATAAATTGGCGCTTAAAGCCAATACACAGGTATCAATCCTCACCGAGGTGC
TGGCTGGCGCATGGGAACGGCTGGAACAGGGGCGGGCAGATATCGTTATTGCTCCAGATATGCACTTTCGCGCCTCTTCT
GAGATTAATAGCCGTAAGTTGTACAAAGTGACCAGTGTATACGTTGCCAGCCCAGACCATCCTATTCATCAAGAGCCAGA
ACCGCTCTCGGAACTGACTCGGGTAAAATACCGGGGGATTGCCGTAGCCGATACCGCGCGGGAGCGGCCCGTCATTACGG
TGCAATTATTGGATAAACAACAGCGCCTGACCGTCAGTACGATTGAAGATAAACGGCGGGCATTATTAGCCGGGTTGGGT
GTGGCGACCATGCCTTATGAGATGGTGGAAAAAGACATTGCCGCAGGCCGGTTGCGGGTGATCGGGCCGGAATACAGCCG
TGAGGCCGATATTATTATGGCGTGGCGGCGTGACAGTATGGGGGAGGCTAAGTCTTGGTGTTTGCGCGAGATCCCCAAGC
TATTGGGTAAGTGA

Upstream 100 bases:

>100_bases
TGATGGTATTAATTGATAAACAGATGGTAAGCGTCTGGACGTTGGATTGTTAGCCAGTTAATCTGGTCGGCATATTCAAA
TTTCCTGATTGAGAAAGATA

Downstream 100 bases:

>100_bases
TCAGCTACTGCGCGTGTGGATTTTGGGTTTAGGTTGCGTCAAACAACGTTCGCTTGCTACGCCCTTGGCCTTGGGGAAAA
GGGCGTTTAGCGTGCTAATT

Product: lysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MARDRALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEA
ADKLTTDAEALARGWETHITIVSEALSPAWKLFPLIDKLALKANTQVSILTEVLAGAWERLEQGRADIVIAPDMHFRASS
EINSRKLYKVTSVYVASPDHPIHQEPEPLSELTRVKYRGIAVADTARERPVITVQLLDKQQRLTVSTIEDKRRALLAGLG
VATMPYEMVEKDIAAGRLRVIGPEYSREADIIMAWRRDSMGEAKSWCLREIPKLLGK

Sequences:

>Translated_297_residues
MARDRALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEA
ADKLTTDAEALARGWETHITIVSEALSPAWKLFPLIDKLALKANTQVSILTEVLAGAWERLEQGRADIVIAPDMHFRASS
EINSRKLYKVTSVYVASPDHPIHQEPEPLSELTRVKYRGIAVADTARERPVITVQLLDKQQRLTVSTIEDKRRALLAGLG
VATMPYEMVEKDIAAGRLRVIGPEYSREADIIMAWRRDSMGEAKSWCLREIPKLLGK
>Mature_296_residues
ARDRALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAA
DKLTTDAEALARGWETHITIVSEALSPAWKLFPLIDKLALKANTQVSILTEVLAGAWERLEQGRADIVIAPDMHFRASSE
INSRKLYKVTSVYVASPDHPIHQEPEPLSELTRVKYRGIAVADTARERPVITVQLLDKQQRLTVSTIEDKRRALLAGLGV
ATMPYEMVEKDIAAGRLRVIGPEYSREADIIMAWRRDSMGEAKSWCLREIPKLLGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789492, Length=296, Percent_Identity=88.8513513513514, Blast_Score=537, Evalue=1e-154,
Organism=Escherichia coli, GI87082024, Length=287, Percent_Identity=36.2369337979094, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1787949, Length=280, Percent_Identity=27.8571428571429, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1786508, Length=294, Percent_Identity=27.2108843537415, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1786713, Length=287, Percent_Identity=26.4808362369338, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33299; Mature: 33168

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARDRALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHR
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEECCCCCC
TKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHITIVSEALSPAWKLFPLIDKLA
CHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHH
LKANTQVSILTEVLAGAWERLEQGRADIVIAPDMHFRASSEINSRKLYKVTSVYVASPDH
HCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCC
PIHQEPEPLSELTRVKYRGIAVADTARERPVITVQLLDKQQRLTVSTIEDKRRALLAGLG
CCCCCCCHHHHHHHHHHCCEEEECCCCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHCC
VATMPYEMVEKDIAAGRLRVIGPEYSREADIIMAWRRDSMGEAKSWCLREIPKLLGK
HHHCCHHHHHHHHHCCEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ARDRALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHR
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEECCCCCC
TKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHITIVSEALSPAWKLFPLIDKLA
CHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHH
LKANTQVSILTEVLAGAWERLEQGRADIVIAPDMHFRASSEINSRKLYKVTSVYVASPDH
HCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCC
PIHQEPEPLSELTRVKYRGIAVADTARERPVITVQLLDKQQRLTVSTIEDKRRALLAGLG
CCCCCCCHHHHHHHHHHCCEEEECCCCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHCC
VATMPYEMVEKDIAAGRLRVIGPEYSREADIIMAWRRDSMGEAKSWCLREIPKLLGK
HHHCCHHHHHHHHHCCEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]