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The map label for this gene is lsrB [H]

Identifier: 218930349

GI number: 218930349

Start: 3712873

End: 3713976

Strand: Direct

Name: lsrB [H]

Synonym: YPO3328

Alternate gene names: 218930349

Gene position: 3712873-3713976 (Clockwise)

Preceding gene: 218930348

Following gene: 218930350

Centisome position: 79.78

GC content: 48.46

Gene sequence:

>1104_bases
TTGCACCAAAAAATAGCCATACAACAAAAACAAGCCAATCTGCTTTATATCAATATTATAAAGCCGGCCTTACCTATTGC
GCTTTCAGAGGATGTAATGATGAGAAAGTTAATATTACCTTGCTTAATAACGACCTTGCTGGCTTCCCATGCGGCGTGGT
CTGCTGACAGCAACACACCACAAAAGGCGAATAAGCCGTTTACCCTGGGTGTCGTGGTTAAAGTGGGGGGTATTCCTTGG
TTCAATGTAATGGAGCAAGGTATCAAAGCGGAAGGTCAGGCATTGGGGGTTAACGCTTGGCAGGTGGGGCCAACGACCGC
AGATCCCGCTGAGCAAGTGCGGGCTATTGAAGACTTAATTGCCAAAAAAGTCGATGTCATCGGGGTGGTTCCTAATGATG
CCAAAGTGTTGGAGCCCGTACTGAAGCGGGCGCAAGAAGCCGGTATTAAGGTTATCACGCACGAGTCACCGGGTCAGATC
AACGCCGACTGGGATTTTGAATTGCTCGATACCCAGAGCATGGGTGCTAACCATATGAAAGATATGGCGCAGTGTATGGG
TGAAGAAGGCAAATACGCCATGTTTGTTGGCAGCCTGACCGTGCCACTGGTCAATGAGTGGGCAGATGCCGCCATTGCTT
ATCAAAAAGCCAATTACCCGAAAATGGTGCTGGTTGAAGACCGCTTCGGTGTCGCCGAGTCTGTCGATGACTCCATGCGT
ACTGCCAATGATTTGTTATCTAAACATAAAGATCTGAAAGGCATTATGTCTTTTGGTTCACAAGGCCCTATTGGGGCTGG
CCGGGCTATTGATAAGCGTAAAAAGAACGATACCACCTGTGTCTTCGGCACCTTCACACCAGGCCAGGGCATTAAGTTGC
TGGAAAAAGGCGCCATTGATGGCGGTTACATCTCCAACCCCATGGTCGCAGGTAAAGTCTTCGTCCAGGTCGCTACCGCC
ATGATGAATGGTGAGCCTATCAAAGATGGCGTCAAACTGGGTGATATGGGCGAAATCAAAACCCAAGGCAATACCATCCT
CAGTGATAACCCTGAAAAGCTGGATATCGAAAATACCAAACGTCTGGTGAAGCTCGGTTTATAA

Upstream 100 bases:

>100_bases
GATAATCCTAAATTAAATATTATTGAATCCGATAAATAGAGGCAAATTAATTAAGGATTATTGACATCATCAAGTTAACC
GCGTTAACACCAGAGAACCG

Downstream 100 bases:

>100_bases
GCACCGCGCAAACTAAAAAAGATGATTTTACCCAAGATAATTAGCGTTGTAGGTAGACGTAATCAGCGAGGGAGATAAGC
CGGGTACTCACCTGCCCGGC

Product: putative sugar ABC transporter periplasmic protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MHQKIAIQQKQANLLYINIIKPALPIALSEDVMMRKLILPCLITTLLASHAAWSADSNTPQKANKPFTLGVVVKVGGIPW
FNVMEQGIKAEGQALGVNAWQVGPTTADPAEQVRAIEDLIAKKVDVIGVVPNDAKVLEPVLKRAQEAGIKVITHESPGQI
NADWDFELLDTQSMGANHMKDMAQCMGEEGKYAMFVGSLTVPLVNEWADAAIAYQKANYPKMVLVEDRFGVAESVDDSMR
TANDLLSKHKDLKGIMSFGSQGPIGAGRAIDKRKKNDTTCVFGTFTPGQGIKLLEKGAIDGGYISNPMVAGKVFVQVATA
MMNGEPIKDGVKLGDMGEIKTQGNTILSDNPEKLDIENTKRLVKLGL

Sequences:

>Translated_367_residues
MHQKIAIQQKQANLLYINIIKPALPIALSEDVMMRKLILPCLITTLLASHAAWSADSNTPQKANKPFTLGVVVKVGGIPW
FNVMEQGIKAEGQALGVNAWQVGPTTADPAEQVRAIEDLIAKKVDVIGVVPNDAKVLEPVLKRAQEAGIKVITHESPGQI
NADWDFELLDTQSMGANHMKDMAQCMGEEGKYAMFVGSLTVPLVNEWADAAIAYQKANYPKMVLVEDRFGVAESVDDSMR
TANDLLSKHKDLKGIMSFGSQGPIGAGRAIDKRKKNDTTCVFGTFTPGQGIKLLEKGAIDGGYISNPMVAGKVFVQVATA
MMNGEPIKDGVKLGDMGEIKTQGNTILSDNPEKLDIENTKRLVKLGL
>Mature_367_residues
MHQKIAIQQKQANLLYINIIKPALPIALSEDVMMRKLILPCLITTLLASHAAWSADSNTPQKANKPFTLGVVVKVGGIPW
FNVMEQGIKAEGQALGVNAWQVGPTTADPAEQVRAIEDLIAKKVDVIGVVPNDAKVLEPVLKRAQEAGIKVITHESPGQI
NADWDFELLDTQSMGANHMKDMAQCMGEEGKYAMFVGSLTVPLVNEWADAAIAYQKANYPKMVLVEDRFGVAESVDDSMR
TANDLLSKHKDLKGIMSFGSQGPIGAGRAIDKRKKNDTTCVFGTFTPGQGIKLLEKGAIDGGYISNPMVAGKVFVQVATA
MMNGEPIKDGVKLGDMGEIKTQGNTILSDNPEKLDIENTKRLVKLGL

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=284, Percent_Identity=26.7605633802817, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39649; Mature: 39649

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQKIAIQQKQANLLYINIIKPALPIALSEDVMMRKLILPCLITTLLASHAAWSADSNTP
CCCCEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
QKANKPFTLGVVVKVGGIPWFNVMEQGIKAEGQALGVNAWQVGPTTADPAEQVRAIEDLI
CCCCCCEEEEEEEEECCCCHHHHHHHCCCCCCCEECCEEEECCCCCCCHHHHHHHHHHHH
AKKVDVIGVVPNDAKVLEPVLKRAQEAGIKVITHESPGQINADWDFELLDTQSMGANHMK
HHHCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEECCCCCCHHHHH
DMAQCMGEEGKYAMFVGSLTVPLVNEWADAAIAYQKANYPKMVLVEDRFGVAESVDDSMR
HHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
TANDLLSKHKDLKGIMSFGSQGPIGAGRAIDKRKKNDTTCVFGTFTPGQGIKLLEKGAID
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCHHHHHCCCC
GGYISNPMVAGKVFVQVATAMMNGEPIKDGVKLGDMGEIKTQGNTILSDNPEKLDIENTK
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCEEECCCCCEECHHHHH
RLVKLGL
HHHHCCC
>Mature Secondary Structure
MHQKIAIQQKQANLLYINIIKPALPIALSEDVMMRKLILPCLITTLLASHAAWSADSNTP
CCCCEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
QKANKPFTLGVVVKVGGIPWFNVMEQGIKAEGQALGVNAWQVGPTTADPAEQVRAIEDLI
CCCCCCEEEEEEEEECCCCHHHHHHHCCCCCCCEECCEEEECCCCCCCHHHHHHHHHHHH
AKKVDVIGVVPNDAKVLEPVLKRAQEAGIKVITHESPGQINADWDFELLDTQSMGANHMK
HHHCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEECCCCCCHHHHH
DMAQCMGEEGKYAMFVGSLTVPLVNEWADAAIAYQKANYPKMVLVEDRFGVAESVDDSMR
HHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
TANDLLSKHKDLKGIMSFGSQGPIGAGRAIDKRKKNDTTCVFGTFTPGQGIKLLEKGAID
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCHHHHHCCCC
GGYISNPMVAGKVFVQVATAMMNGEPIKDGVKLGDMGEIKTQGNTILSDNPEKLDIENTK
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCEEECCCCCEECHHHHH
RLVKLGL
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA