Click here to switch to the map view.

The map label for this gene is ybbN [H]

Identifier: 218930127

GI number: 218930127

Start: 3438325

End: 3439194

Strand: Direct

Name: ybbN [H]

Synonym: YPO3082

Alternate gene names: 218930127

Gene position: 3438325-3439194 (Clockwise)

Preceding gene: 218930126

Following gene: 218930128

Centisome position: 73.88

GC content: 50.8

Gene sequence:

>870_bases
ATGCTAACACCTACAACGATTGAAATTACTGAAGCAAACCTGCACCAAGCCATAGAACAATCCATGTCAGTTCCTGTGTT
GTTCTATTTTTGGTCTGAACGCAGCCAGCACTGCCTGCAATTGACACCAACACTGGATAAACTGGCCGCCGAGTATGCGG
GTCAATTTATTCTGGCCCGTGTCGATTGCGATGCACAACCCATGGTGGCGTCGCAATTTGGTTTACGCTCTATTCCGGCG
GTGTACCTGTTTAAAGATGGCCAGCCCGTTGATGGCTTCCAAGGGCCACAACCAGAAGAGGTGATCCGCGAACTGCTACA
GCGGGTACTGCCAAAACCAGAAGAGCTAAAATCGGCCGAAGCGGCGCAACTGATGAGTGAAGGCAAAGTCCCTGAAGCGC
TGCCACTGCTGAAAGAAGCCTGGCAACTCGCCCAACAAAGTAACAGCCCACAAACTAGCGAAATCGCCCTGCAACTGGCA
GAAGCACAAATTTTGCTGAACCGCAGCGAAGATGCCGAAAGCGTATTGGCAACCCTTCCACTGCAAGATCGTGATACCCG
TTATCAGGGGCTAATTGCCCAAATTGAGCTACTGAAACAAGCGGCTAATACGCCAGAAATCCAGCAACTACAGCAACAAC
TGGCAGAACAGCCGGATAACGTCGAGCTGGCCGTGCAATTGGCCTTACAACTGCATCAGGTTGGCCGCAACGAAGAAGCG
TTGGAACTGCTATTGGGTCACCTGAAAAAAGATTTAGCCGCAGCGAACGGTACGGCACGTAAAACATTAATGGATATTTT
AGCCGCATTAGGGACTGGCGATGCACTGGCCGCTAAATACCGCCGCCAACTCTACGCATTATTGTACTGA

Upstream 100 bases:

>100_bases
AGAGTCCTGCGCGGTAATAGTTAAGCCAGATCATTGACTAAGGGTTGAAGCAAGGCAATCCGCCCCCATCTATCGTTAAA
ACGGATGAGAGAAATAATTC

Downstream 100 bases:

>100_bases
TTAGCGTATTTCCACCGTTATTTGTACCGTACTTGTACCATCATTTGCTACTGCGCGGGGCAATCCTGCGCAGTTTTATG
CTGCTTTCCCGCCATTTTTC

Product: putative thioredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MLTPTTIEITEANLHQAIEQSMSVPVLFYFWSERSQHCLQLTPTLDKLAAEYAGQFILARVDCDAQPMVASQFGLRSIPA
VYLFKDGQPVDGFQGPQPEEVIRELLQRVLPKPEELKSAEAAQLMSEGKVPEALPLLKEAWQLAQQSNSPQTSEIALQLA
EAQILLNRSEDAESVLATLPLQDRDTRYQGLIAQIELLKQAANTPEIQQLQQQLAEQPDNVELAVQLALQLHQVGRNEEA
LELLLGHLKKDLAAANGTARKTLMDILAALGTGDALAAKYRRQLYALLY

Sequences:

>Translated_289_residues
MLTPTTIEITEANLHQAIEQSMSVPVLFYFWSERSQHCLQLTPTLDKLAAEYAGQFILARVDCDAQPMVASQFGLRSIPA
VYLFKDGQPVDGFQGPQPEEVIRELLQRVLPKPEELKSAEAAQLMSEGKVPEALPLLKEAWQLAQQSNSPQTSEIALQLA
EAQILLNRSEDAESVLATLPLQDRDTRYQGLIAQIELLKQAANTPEIQQLQQQLAEQPDNVELAVQLALQLHQVGRNEEA
LELLLGHLKKDLAAANGTARKTLMDILAALGTGDALAAKYRRQLYALLY
>Mature_289_residues
MLTPTTIEITEANLHQAIEQSMSVPVLFYFWSERSQHCLQLTPTLDKLAAEYAGQFILARVDCDAQPMVASQFGLRSIPA
VYLFKDGQPVDGFQGPQPEEVIRELLQRVLPKPEELKSAEAAQLMSEGKVPEALPLLKEAWQLAQQSNSPQTSEIALQLA
EAQILLNRSEDAESVLATLPLQDRDTRYQGLIAQIELLKQAANTPEIQQLQQQLAEQPDNVELAVQLALQLHQVGRNEEA
LELLLGHLKKDLAAANGTARKTLMDILAALGTGDALAAKYRRQLYALLY

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Escherichia coli, GI87081747, Length=289, Percent_Identity=71.6262975778547, Blast_Score=422, Evalue=1e-119,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 32012; Mature: 32012

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTPTTIEITEANLHQAIEQSMSVPVLFYFWSERSQHCLQLTPTLDKLAAEYAGQFILAR
CCCCCEEEEEHHHHHHHHHHHCCCCEEEEEECCCCCHHEEECCCHHHHHHHHCCCEEEEE
VDCDAQPMVASQFGLRSIPAVYLFKDGQPVDGFQGPQPEEVIRELLQRVLPKPEELKSAE
ECCCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
AAQLMSEGKVPEALPLLKEAWQLAQQSNSPQTSEIALQLAEAQILLNRSEDAESVLATLP
HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCC
LQDRDTRYQGLIAQIELLKQAANTPEIQQLQQQLAEQPDNVELAVQLALQLHQVGRNEEA
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHH
LELLLGHLKKDLAAANGTARKTLMDILAALGTGDALAAKYRRQLYALLY
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLTPTTIEITEANLHQAIEQSMSVPVLFYFWSERSQHCLQLTPTLDKLAAEYAGQFILAR
CCCCCEEEEEHHHHHHHHHHHCCCCEEEEEECCCCCHHEEECCCHHHHHHHHCCCEEEEE
VDCDAQPMVASQFGLRSIPAVYLFKDGQPVDGFQGPQPEEVIRELLQRVLPKPEELKSAE
ECCCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
AAQLMSEGKVPEALPLLKEAWQLAQQSNSPQTSEIALQLAEAQILLNRSEDAESVLATLP
HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCC
LQDRDTRYQGLIAQIELLKQAANTPEIQQLQQQLAEQPDNVELAVQLALQLHQVGRNEEA
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHH
LELLLGHLKKDLAAANGTARKTLMDILAALGTGDALAAKYRRQLYALLY
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]