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The map label for this gene is ecpD [H]

Identifier: 218929995

GI number: 218929995

Start: 3287481

End: 3288260

Strand: Reverse

Name: ecpD [H]

Synonym: YPO2944

Alternate gene names: 218929995

Gene position: 3288260-3287481 (Counterclockwise)

Preceding gene: 218929996

Following gene: 218929993

Centisome position: 70.66

GC content: 41.15

Gene sequence:

>780_bases
TTGTTATTTGGTAGCGTGATGTTTTCAAAAATAATTATTTTAGTGTTGTCGCTGACGATAAGCAGCATCCCCGCGTTTGC
AGCTATGACGATCAGTGGCACACGTGTGATATTTCCGGCAGCCGAAAAAGAAGTGAGCATACGCACCAATAATAAAGGCG
TACAGCCGGCTTTAGTCCAAGTTTGGGTCGATGACGGAAAAACGAATGCTAACATCAATAGCATGAAGCTTCCTTTTATG
GTTACCCCCCCTGTTTTTCGCGTCGAGCCAGGTAAAGGGCAGACCGTGCGAATGATTTATAACGGCATGGCATTACCACA
GAATAAAGAGTCAGTGTTCTGGTTTAATATGCTGGAAATTCCGGCAGTAAAGAAAGAGGGTAATACCCAAAATAAGCTAG
AATTGGCTTTTCGTACCCGAATTAAAGTTTTTTATCGTCCTACCTCATTAGAGAGTAATAGTGCCGCACAAAGCGCCCAG
TTGAAATGGACGTTGGTTGACGATAATCAAAAAGGGCGCGGTGTGAAAGTGGTGAACCCTACACCTTATTATATTTCCTT
TGACAGCGGGAGCATTACTGTTGGCGCTAAAAGTGTCGAAATAATAACGGATATGGTCCCTCCGTTTTCTGAAAAAATGT
TTTTCCCAAAACTTAAGTTATTGGGTTCGACAAGTATTTCAAAGATGAATTATAAAATACTAAATGATTATGGCGCAGCC
ATTGATGAGGAATTATCTTTCTCTCAAGGGCAAGGTGTCTTAGTGAGTAAGAAAAAATAA

Upstream 100 bases:

>100_bases
TGGGTCACCGCAGCAGTAAAGCATAACAGCTTGCTGCCGAGGCGGATAAAACGCTGCGGTAGCAAGTCTGTTATAAAGAT
AAGTCTGCTGATTTAAAGCA

Downstream 100 bases:

>100_bases
TTATATCTTGCTGAAAACAATATAATAACTCTATGGCGTCAACGCATTAGTTTCGGACAGGAAAACGTAAACATCTTTTG
TAAGCGATGTGATAAGTCGT

Product: putative pili chaperone protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MLFGSVMFSKIIILVLSLTISSIPAFAAMTISGTRVIFPAAEKEVSIRTNNKGVQPALVQVWVDDGKTNANINSMKLPFM
VTPPVFRVEPGKGQTVRMIYNGMALPQNKESVFWFNMLEIPAVKKEGNTQNKLELAFRTRIKVFYRPTSLESNSAAQSAQ
LKWTLVDDNQKGRGVKVVNPTPYYISFDSGSITVGAKSVEIITDMVPPFSEKMFFPKLKLLGSTSISKMNYKILNDYGAA
IDEELSFSQGQGVLVSKKK

Sequences:

>Translated_259_residues
MLFGSVMFSKIIILVLSLTISSIPAFAAMTISGTRVIFPAAEKEVSIRTNNKGVQPALVQVWVDDGKTNANINSMKLPFM
VTPPVFRVEPGKGQTVRMIYNGMALPQNKESVFWFNMLEIPAVKKEGNTQNKLELAFRTRIKVFYRPTSLESNSAAQSAQ
LKWTLVDDNQKGRGVKVVNPTPYYISFDSGSITVGAKSVEIITDMVPPFSEKMFFPKLKLLGSTSISKMNYKILNDYGAA
IDEELSFSQGQGVLVSKKK
>Mature_259_residues
MLFGSVMFSKIIILVLSLTISSIPAFAAMTISGTRVIFPAAEKEVSIRTNNKGVQPALVQVWVDDGKTNANINSMKLPFM
VTPPVFRVEPGKGQTVRMIYNGMALPQNKESVFWFNMLEIPAVKKEGNTQNKLELAFRTRIKVFYRPTSLESNSAAQSAQ
LKWTLVDDNQKGRGVKVVNPTPYYISFDSGSITVGAKSVEIITDMVPPFSEKMFFPKLKLLGSTSISKMNYKILNDYGAA
IDEELSFSQGQGVLVSKKK

Specific function: Probably mediates assembly of a pilin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=246, Percent_Identity=40.2439024390244, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1789532, Length=243, Percent_Identity=33.7448559670782, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1788428, Length=233, Percent_Identity=33.0472103004292, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1790771, Length=219, Percent_Identity=32.8767123287671, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1786743, Length=238, Percent_Identity=29.8319327731092, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787171, Length=240, Percent_Identity=31.6666666666667, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788677, Length=168, Percent_Identity=36.9047619047619, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786936, Length=234, Percent_Identity=29.0598290598291, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081806, Length=237, Percent_Identity=26.5822784810127, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87082203, Length=233, Percent_Identity=26.6094420600858, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 28660; Mature: 28660

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFGSVMFSKIIILVLSLTISSIPAFAAMTISGTRVIFPAAEKEVSIRTNNKGVQPALVQ
CEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCEEEE
VWVDDGKTNANINSMKLPFMVTPPVFRVEPGKGQTVRMIYNGMALPQNKESVFWFNMLEI
EEEECCCCCCCCCEEECCEEECCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEEC
PAVKKEGNTQNKLELAFRTRIKVFYRPTSLESNSAAQSAQLKWTLVDDNQKGRGVKVVNP
CCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECC
TPYYISFDSGSITVGAKSVEIITDMVPPFSEKMFFPKLKLLGSTSISKMNYKILNDYGAA
CCEEEEECCCEEEECCCCEEEEECCCCCHHHCCCCCEEEEECCCCCCCEEEEEEECCCCC
IDEELSFSQGQGVLVSKKK
CCCCCCCCCCCEEEEECCC
>Mature Secondary Structure
MLFGSVMFSKIIILVLSLTISSIPAFAAMTISGTRVIFPAAEKEVSIRTNNKGVQPALVQ
CEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCEEEE
VWVDDGKTNANINSMKLPFMVTPPVFRVEPGKGQTVRMIYNGMALPQNKESVFWFNMLEI
EEEECCCCCCCCCEEECCEEECCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEEC
PAVKKEGNTQNKLELAFRTRIKVFYRPTSLESNSAAQSAQLKWTLVDDNQKGRGVKVVNP
CCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECC
TPYYISFDSGSITVGAKSVEIITDMVPPFSEKMFFPKLKLLGSTSISKMNYKILNDYGAA
CCEEEEECCCEEEECCCCEEEEECCCCCHHHCCCCCEEEEECCCCCCCEEEEEEECCCCC
IDEELSFSQGQGVLVSKKK
CCCCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8102362; 8202364; 9278503 [H]